View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4542_low_3 (Length: 723)
Name: NF4542_low_3
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 21 - 715
Target Start/End: Complemental strand, 500785 - 500094
Alignment:
| Q |
21 |
cttccttcacatgaagcgatctttcag----tgtacgtacttccgctctaattaatcatcctttttatcatatatagtccaagtttgnnnnnnnacactt |
116 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||| |||||| |
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| T |
500785 |
cttccttcacatgaagcgatctttcagggtacgtacgtacttccgctctaatttatc--cctttttatcatatctagtctaagtttgtttttttacactt |
500688 |
T |
|
| Q |
117 |
tatttttctgatcaccataaacactactgaaacttacaacacgtccaaggttcgaatccagagaataggcgtacaacctaacaatatcggcattgtcaat |
216 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
500687 |
catttctctgatcaggataaacactactgaaacttacaacacgtccaaggtttgaatccagagaataggtatacaacctagcaatatcggcattgtcaat |
500588 |
T |
|
| Q |
217 |
agaactagtcttttacgatcgtttctttatactataattgattcaaagttagaaacattttcattcgtatcttatagcagataggtgcaatgcctaagcg |
316 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
500587 |
agaacttgtcttttaagatcgtttctttatactataattgattcaaagttagaaacattttcgttcgtatcttatagcagataggtgcaatgcctaagcg |
500488 |
T |
|
| Q |
317 |
acggttttgggatctgtcaagttgtagttcttcttctaatagcagcatccaaagctaatctatagatatgatgtgtttatcagttttagaggttccgaca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
500487 |
acggttttgggatctgtcaagttgtagttcttcttctaatagcagcatccaaag-----ctatagatatgatgtgtttatcagtttcagaggttccgaca |
500393 |
T |
|
| Q |
417 |
cacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacagctcaacaaaggtcgttctatttc |
516 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
500392 |
cacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacagctcaacaaaggtcattctatttc |
500293 |
T |
|
| Q |
517 |
aactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatccacatggtgtttggatgaaatggctaca |
616 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
500292 |
aactcaacttcttcatgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatcaacatggtgtttggatgaaatggctaca |
500193 |
T |
|
| Q |
617 |
attgctgattgccggttaaatttgaaacaaactgttttctatgatgttgctccgtctgatgtacgaaaacagaaaggtttttatcaggatgcctttgct |
715 |
Q |
| |
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||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| |
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|
| T |
500192 |
attgctgattgccagttaaatttgaatcacactgttttctatgatgttgctccgtctgatgtgcgaaaacagaaaggtgtttatcagaatgtctttgct |
500094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 386 - 613
Target Start/End: Complemental strand, 25436558 - 25436331
Alignment:
| Q |
386 |
gatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatg |
485 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||| |||||| |||||||||| | ||||||| |||||||||||||||| ||||| ||||||| |
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| T |
25436558 |
gatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttaccttcaaggatg |
25436459 |
T |
|
| Q |
486 |
atgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttc |
585 |
Q |
| |
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| |||||| | ||||| | |||||| | |||||||| | |||||||||| ||||| |||| ||| ||| ||||||||| |||||||||||| |
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| T |
25436458 |
acaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgtatcattgttttctcaagagattatgcttc |
25436359 |
T |
|
| Q |
586 |
atccacatggtgtttggatgaaatggct |
613 |
Q |
| |
|
||| |||||||||||||||||||||||| |
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|
| T |
25436358 |
atcaacatggtgtttggatgaaatggct |
25436331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 376 - 613
Target Start/End: Original strand, 25484271 - 25484508
Alignment:
| Q |
376 |
ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc |
475 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||| ||||| || || | |||| ||| |||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
25484271 |
ctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtattttcacc |
25484370 |
T |
|
| Q |
476 |
tttaaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaag |
575 |
Q |
| |
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|| |||||||| ||||| | ||||| | |||||| | |||||||| | ||||||| ||| ||||| ||||||| || ||||||| |||| |
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|
| T |
25484371 |
ttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttctccaaag |
25484470 |
T |
|
| Q |
576 |
attatgcttcatccacatggtgtttggatgaaatggct |
613 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||| |
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|
| T |
25484471 |
attatgcttcttcaacatggtgtttggatgaaatggct |
25484508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 376 - 613
Target Start/End: Original strand, 25636512 - 25636749
Alignment:
| Q |
376 |
ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc |
475 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||| | ||||| |||||||| |||| ||| ||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
25636512 |
ctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgacc |
25636611 |
T |
|
| Q |
476 |
tttaaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaag |
575 |
Q |
| |
|
|| |||||||| | ||| | ||||| || |||||| |||||| | | |||||| | | || || |||||||| ||| | ||||| |||| |
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|
| T |
25636612 |
ttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaag |
25636711 |
T |
|
| Q |
576 |
attatgcttcatccacatggtgtttggatgaaatggct |
613 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
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| T |
25636712 |
attatgcttcatcaacatggtgtttggatgaaatggct |
25636749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 378 - 613
Target Start/End: Original strand, 25442322 - 25442557
Alignment:
| Q |
378 |
atagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctt |
477 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| | ||||| ||||| | |||| ||| |||||||| | |||||||| |||||||||||||||| ||| |
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|
| T |
25442322 |
atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt |
25442421 |
T |
|
| Q |
478 |
taaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagat |
577 |
Q |
| |
|
|||||||| | ||| | ||||| || |||||| |||||| | | |||||| | | || || |||||||| ||| | ||||| |||||| |
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|
| T |
25442422 |
caaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaagat |
25442521 |
T |
|
| Q |
578 |
tatgcttcatccacatggtgtttggatgaaatggct |
613 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25442522 |
tatgcttcatcaacatggtgtttggatgaaatggct |
25442557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 377 - 474
Target Start/End: Complemental strand, 25479049 - 25478952
Alignment:
| Q |
377 |
tatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcac |
474 |
Q |
| |
|
|||||||| || |||||||||||||| |||||| ||||| || || || |||| ||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
25479049 |
tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcac |
25478952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 487
Target Start/End: Complemental strand, 35106099 - 35105988
Alignment:
| Q |
376 |
ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc |
475 |
Q |
| |
|
||||||||| || |||||||||||||| |||||| | ||||| ||||||||||||| |||||||| ||||||||||| | ||||| |||||||| || |
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|
| T |
35106099 |
ctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttgcc |
35106000 |
T |
|
| Q |
476 |
tttaaggatgat |
487 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35105999 |
ttcaaggatgat |
35105988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 487
Target Start/End: Complemental strand, 35169759 - 35169648
Alignment:
| Q |
376 |
ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc |
475 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||| | ||||| || |||||||||| ||||||||| ||||||||||| | |||||| ||| ||||| || |
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|
| T |
35169759 |
ctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgcc |
35169660 |
T |
|
| Q |
476 |
tttaaggatgat |
487 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35169659 |
ttcaaggatgat |
35169648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 471
Target Start/End: Complemental strand, 35178050 - 35177955
Alignment:
| Q |
376 |
ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtatttt |
471 |
Q |
| |
|
||||| ||| || |||||||||||||| |||||| | ||||| ||||||||||||| ||||||||| ||||||||||| | |||||||||||||| |
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|
| T |
35178050 |
ctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttt |
35177955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 486
Target Start/End: Complemental strand, 35055173 - 35055076
Alignment:
| Q |
389 |
gtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatga |
486 |
Q |
| |
|
||||| ||||||||||||||| | ||||| ||||| | ||||| ||||||||| ||||||||||| | |||||||||||||| |||| |||||||| |
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|
| T |
35055173 |
gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatga |
35055076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 384 - 468
Target Start/End: Complemental strand, 35047128 - 35047044
Alignment:
| Q |
384 |
atgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtat |
468 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
35047128 |
atgatgtgtttatcagtttcagaggcaccgacactcgcaacactttcatcgatcatctctatcatcatctcatcagaaaaggtat |
35047044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 453
Target Start/End: Complemental strand, 35184048 - 35183971
Alignment:
| Q |
376 |
ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatct |
453 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| | ||||| |||| |||||||| ||||||||| |||||||||| |
|
|
| T |
35184048 |
ctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatct |
35183971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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