View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_low_4 (Length: 673)

Name: NF4542_low_4
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_low_4
NF4542_low_4
[»] chr1 (1 HSPs)
chr1 (35-653)||(24142278-24142898)
[»] chr2 (3 HSPs)
chr2 (326-406)||(20625647-20625727)
chr2 (196-261)||(16362888-16362953)
chr2 (340-382)||(16363037-16363079)
[»] scaffold0391 (1 HSPs)
scaffold0391 (302-408)||(604-711)
[»] chr4 (2 HSPs)
chr4 (446-541)||(21118225-21118320)
chr4 (485-540)||(18954443-18954498)
[»] chr6 (6 HSPs)
chr6 (196-250)||(9030704-9030758)
chr6 (326-382)||(1771900-1771956)
chr6 (206-261)||(1771775-1771830)
chr6 (66-153)||(9030477-9030564)
chr6 (196-246)||(9030630-9030680)
chr6 (315-533)||(9030942-9031165)
[»] chr7 (3 HSPs)
chr7 (211-260)||(42229445-42229494)
chr7 (344-387)||(42229583-42229626)
chr7 (497-531)||(20216363-20216397)
[»] chr8 (1 HSPs)
chr8 (204-236)||(5979492-5979524)


Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 35 - 653
Target Start/End: Complemental strand, 24142898 - 24142278
Alignment:
Q  35 cacagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24142898 cacagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctaaatgacgtgtttgtgctcacc 24142799  T
Q  135 caataccatcttcatgtggtaagattctacatttttaacttttttgtactannnnnnnnnn--atgtaatctgaaggctatgtttatttttatttgtgta 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||            |||||| ||||||||||||||||||||||||||||||    
T  24142798 caataccatcttcatgtggtaagattctacatttttaacttttttgtactattttttttttttatgtaagctgaaggctatgtttatttttatttgtgta 24142699  T
Q  233 aactaaagtgaatcgtatcatgatattaannnnnnnnnnnnncatttctgcagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctatac 332  Q
    |||||| ||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142698 aactaacgtgaatcgtatcatgatattaattttttgttttttcatttctgcagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctatac 24142599  T
Q  333 aagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggctacagtcagttatcctatcctttaccac 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142598 aagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggctacagtcagttatcctatcctttaccac 24142499  T
Q  433 gattttttatctacttttgttgggagatggaacgaggaagcgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgtgtcttgtc 532  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142498 gattttttatctacttttgttgggagatggaacgaggaggtgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgtgtcttgtc 24142399  T
Q  533 tactgcatcccccattaatggtctcatattggaccataaacttcctatttctaggtctgagggtatgatgtggacgaggctaatagcaggtcnnnnnnnc 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  24142398 tactgcatcccccattaatggtctcatattggaccataaacttcctatttctaggtctgagggtatgatgtggacgaggctaatagcaggtcaaaaaaac 24142299  T
Q  633 aaagggtgctcatgcacgttt 653  Q
    |||||||||||||||||||||    
T  24142298 aaagggtgctcatgcacgttt 24142278  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 20625647 - 20625727
Alignment:
Q  326 gctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggcta 406  Q
    ||||||||||||| | || ||||||||||||||||| ||||||||||| | ||||||||| ||  ||||||||||||||||    
T  20625647 gctatacaagaaccagatgtggataggatgcaagagcgatggttcaaagaggccatgtgatccaatggacttcagtggcta 20625727  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 16362888 - 16362953
Alignment:
Q  196 atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa 261  Q
    |||||| ||||| |||||| |||||||||||| |||||||| || |||||| ||||||||||||||    
T  16362888 atgtaaactgaatgctatgattatttttatttatgtaaactgaattgaatcatatcatgatattaa 16362953  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 16363037 - 16363079
Alignment:
Q  340 aaatttggataggatgcaagagtgatggttcaaaaatgccatg 382  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  16363037 aaatttggatagcatgcaagaatgatggttcaaagatgccatg 16363079  T

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Target: scaffold0391 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 711 - 604
Alignment:
Q  302 tgtgaataacggaaaaaagctactg-ctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcag 400  Q
    |||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||  |||| ||||| ||| |||| |||   ||||||||||     
T  711 tgtgaacaacggcaaaaagctactggctatacaagaaccacatttggataggatgcaagagcaatgggtcaaagatgtcatgcgagtaagtggacttcaa 612  T
Q  401 tggctaca 408  Q
    ||||||||    
T  611 tggctaca 604  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 541
Target Start/End: Original strand, 21118225 - 21118320
Alignment:
Q  446 cttttgttgggagatggaacgaggaagcgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgtgtcttgtctactgcatc 541  Q
    |||||||||  ||||||||||||||  |||||| |||| || || | |||| |||||| ||||| ||||||||||||||||| ||| | |||||||    
T  21118225 cttttgttgaaagatggaacgaggagacgtctagcttccatttttcgattaaggagataacaatgacacttgatgatgtgtcatgtttgctgcatc 21118320  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 18954498 - 18954443
Alignment:
Q  485 atcttccaattagggagatgacaataacacttgatgatgtgtcttgtctactgcat 540  Q
    |||||||| || ||||||||||||| | ||| ||||||||||| ||||||||||||    
T  18954498 atcttccagttggggagatgacaatgatactggatgatgtgtcatgtctactgcat 18954443  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 9030704 - 9030758
Alignment:
Q  196 atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtat 250  Q
    |||||| ||||||||||||||||||||||||| ||||||||  | ||||||||||    
T  9030704 atgtaagctgaaggctatgtttatttttatttttgtaaactggattgaatcgtat 9030758  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 1771900 - 1771956
Alignment:
Q  326 gctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatg 382  Q
    |||||||||||   |||||||||||||||||||||| |||| |||||| ||||||||    
T  1771900 gctatacaagagtcaaatttggataggatgcaagagcgatgattcaaagatgccatg 1771956  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 1771775 - 1771830
Alignment:
Q  206 aaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa 261  Q
    ||||||||||||| |||||| |  |||||||||| |||||||| ||||||||||||    
T  1771775 aaggctatgtttaattttatataagtaaactaaactgaatcgtgtcatgatattaa 1771830  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 9030477 - 9030564
Alignment:
Q  66 gaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtgg 153  Q
    ||||||||||||||||| |||| |||  |||| |||| || ||||     |||| ||| |||||||||||||||||||||||||||||    
T  9030477 gaggtggaggtggagccacaaccgctaaatgaatatcttgatggcgcacgtgacttgtctgtgctcacccaataccatcttcatgtgg 9030564  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 9030630 - 9030680
Alignment:
Q  196 atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatc 246  Q
    |||||| ||||||| ||||||||||||||||| |||||||| || ||||||    
T  9030630 atgtaaactgaaggttatgtttatttttatttatgtaaactgaattgaatc 9030680  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 533
Target Start/End: Original strand, 9030942 - 9031165
Alignment:
Q  315 aaaaagctactgc-tatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggctaca----g 409  Q
    ||||||||||||  ||||||||||| || ||||||||||||||||||| | ||||| | | || ||||| |||||    |||||  | || ||||    |    
T  9030942 aaaaagctactggatatacaagaaccaagtttggataggatgcaagagcggtggtttatagataccatgcgagccaacagactttggcgggtacaacatg 9031041  T
Q  410 tcagttatcctatcctttaccacgattttttatctacttttgttgggagatggaacgaggaagcgtctaacttcaatcttccaattagggagatgacaat 509  Q
    |||||||||||||| || || ||||  | |||||| ||||||||| ||||||| | |||||  | |||| |||| ||||||  |||| ||| ||||  |     
T  9031042 tcagttatcctatctttgacaacgacctgttatctgcttttgttgagagatggtatgaggagtcctctagcttccatcttctgattaaggaaatgatgac 9031141  T
Q  510 aacacttgatgatgtgtcttgtct 533  Q
     |||||||||||||| ||||||||    
T  9031142 tacacttgatgatgtatcttgtct 9031165  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 42229445 - 42229494
Alignment:
Q  211 tatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatatta 260  Q
    ||||||||||||||||| |||||||| || |||||||||||||| |||||    
T  42229445 tatgtttatttttatttatgtaaacttaactgaatcgtatcatgctatta 42229494  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 42229583 - 42229626
Alignment:
Q  344 ttggataggatgcaagagtgatggttcaaaaatgccatgtgagc 387  Q
    |||||||||||||||||||||||||||||| || ||| ||||||    
T  42229583 ttggataggatgcaagagtgatggttcaaagataccacgtgagc 42229626  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 531
Target Start/End: Complemental strand, 20216397 - 20216363
Alignment:
Q  497 gggagatgacaataacacttgatgatgtgtcttgt 531  Q
    ||||||||||||| |||||||||||||||||||||    
T  20216397 gggagatgacaatgacacttgatgatgtgtcttgt 20216363  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 5979492 - 5979524
Alignment:
Q  204 tgaaggctatgtttatttttatttgtgtaaact 236  Q
    |||||||||||||||||||||||| ||||||||    
T  5979492 tgaaggctatgtttatttttatttatgtaaact 5979524  T

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