View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4542_low_5 (Length: 426)
Name: NF4542_low_5
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 14340941 - 14341359
Alignment:
| Q |
1 |
gcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340941 |
gcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaat |
14341040 |
T |
|
| Q |
101 |
gcaaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341041 |
gcaaggagccaaggtaattatgttcaattaagtttttgttatctttaaatgatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttg |
14341140 |
T |
|
| Q |
201 |
catgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgg---gaagtccataaaaaatgg |
297 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14341141 |
catgatttgtggcaggttttatgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatgg |
14341240 |
T |
|
| Q |
298 |
aacattttatggctttgcatgtgatgacccctctacatatatcagctgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaatt |
397 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341241 |
aacattttatggctttgcatgtgatgacccctctacatatatcagttgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaatt |
14341340 |
T |
|
| Q |
398 |
ctctctggttccttctctg |
416 |
Q |
| |
|
||||||||||||||||||| |
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| T |
14341341 |
ctctctggttccttctctg |
14341359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3602061 - 3602400
Alignment:
| Q |
1 |
gcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3602061 |
gcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacggtcaaatatacacttatcagcaat |
3602160 |
T |
|
| Q |
101 |
gcaaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttg |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3602161 |
gcaaggaaccaaggtaat---gttcaattaagtttttgttatctttaaaatatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttg |
3602257 |
T |
|
| Q |
201 |
catgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgg---gaagtccataaaaaatgg |
297 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3602258 |
catgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatgg |
3602357 |
T |
|
| Q |
298 |
aacattttatggctttgcatgtgatgacccctctacatatatc |
340 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||||||| |
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|
| T |
3602358 |
aacagtttatggcattgcatgtgatgattcctctacatatatc |
3602400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 3591121 - 3591225
Alignment:
| Q |
3 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |
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|
| T |
3591121 |
agctaaaagaccaagtgtttcagctaaggagaaagtttccattagccaaatttacatatgttgatgtttacacagtaaaatataaacttatcagcaacgc |
3591220 |
T |
|
| Q |
103 |
aagga |
107 |
Q |
| |
|
||||| |
|
|
| T |
3591221 |
aagga |
3591225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 3569057 - 3569173
Alignment:
| Q |
1 |
gcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaat |
100 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |
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|
| T |
3569057 |
gcagctaaaagac-aagcgtttcagctaaggagaaagtttccattagccaaatttacatatgttgatgtttacacagtaaaatagaaacttatcagcaac |
3569155 |
T |
|
| Q |
101 |
gcaaggagccaaggtaat |
118 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
3569156 |
gcaaggagccagggtaat |
3569173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 3569487 - 3569570
Alignment:
| Q |
170 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
253 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| |||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
3569487 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattggaattttgctgtggaagttac |
3569570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 3577213 - 3577296
Alignment:
| Q |
170 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
253 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||| |
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|
| T |
3577213 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggctggttttgtaaatccattgaaattttgctgtggaagttac |
3577296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 3602399 - 3602453
Alignment:
| Q |
362 |
tcccaagcagcaaatgaatggattgttaaacaaattctctctggttccttctctg |
416 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3602399 |
tcccaagcagcaaaggaatggattgctaaacaaattctctatggttccttctctg |
3602453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 3591554 - 3591637
Alignment:
| Q |
170 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
253 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||||||||||||||||| | ||||||||| ||| || ||||||| |||| |
|
|
| T |
3591554 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
3591637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 170 - 416
Target Start/End: Original strand, 1409817 - 1410059
Alignment:
| Q |
170 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatac |
269 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||| | ||| || | ||| |
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|
| T |
1409817 |
gtgcacaattaggttttaactctcatgcttg----atttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacataa |
1409912 |
T |
|
| Q |
270 |
attattgtgggaagtccataaaaaatggaacattttatggctttgcatgtgatgacccctctacatatatcagctgggatggtatacactactcccaagc |
369 |
Q |
| |
|
||| | | |||| |||||| |||||||||| |||||||| | |||||||| | || |||| | |||| || |||||||||||||||||||| ||||| |
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|
| T |
1409913 |
attgtgggttgaaggccataataaatggaacagtttatggcaatccatgtgataatccttctaaacatattagttgggatggtatacactactctcaagc |
1410012 |
T |
|
| Q |
370 |
agcaaatgaatggattgttaaacaaattctctctggttccttctctg |
416 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
1410013 |
tgcaaatcaatgggttgctaaacaaattctctatggttccttctctg |
1410059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 1409464 - 1409581
Alignment:
| Q |
1 |
gcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||| |||||| |
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|
| T |
1409464 |
gcagctaaaagacaaagtgtttcagctaaggcgaaagtttccattagccaagtttacatatgttgatgtgtacacagccaaatataaacttattagcaat |
1409563 |
T |
|
| Q |
101 |
gcaaggagccaaggtaat |
118 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
1409564 |
gcaaagagccaaggtaat |
1409581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 1412556 - 1412624
Alignment:
| Q |
47 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
115 |
Q |
| |
|
||||||||||||||||||||| | |||| || ||||||| ||| ||||||||||||||||||| |||| |
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|
| T |
1412556 |
gccaaatttacatatgttgatatgtacaaagccaaatatgaactaatcagcaatgcaaggagccgaggt |
1412624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 1417191 - 1417259
Alignment:
| Q |
47 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
115 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
1417191 |
gccaaatttacatatgttgatatgtacaaagccaaacatgaactaatcagcaatgcaaagagccaaggt |
1417259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 1421679 - 1421747
Alignment:
| Q |
47 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
115 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1421679 |
gccaaatttacatatgttgatatgtacaaagctaaatatgaactaatcagcaatgcaaagagccaaggt |
1421747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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