View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_high_17 (Length: 242)
Name: NF4543_high_17
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 42729560 - 42729326
Alignment:
| Q |
8 |
gagcacagaatgtttcttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcacttcaagaactcctacacaagttg |
107 |
Q |
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| T |
42729560 |
gagcacagaatgttccttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcacttcaagaactcctacacaagttg |
42729461 |
T |
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| Q |
108 |
ctagccatgctcaaaaatactttctcagattggctactatcaacaagaagcgacgttcaagtctctttgacttggtatatactatactttgttagacaaa |
207 |
Q |
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| T |
42729460 |
ctagccatgctcaaaaatactttctcagattggctactatcaacaagaagcgacgttcaagtctctttgacttggtatatactatactttgttagacaaa |
42729361 |
T |
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| Q |
208 |
ttcaattcattcatcatcatcaattgtttaattat |
242 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
42729360 |
ttcaattcattcatcatcatcaattgcttaattat |
42729326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 34848423 - 34848523
Alignment:
| Q |
23 |
cttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcacttcaagaactcctacacaagttgctagccatgctcaaa |
122 |
Q |
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| T |
34848423 |
cttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaa |
34848522 |
T |
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| Q |
123 |
a |
123 |
Q |
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| T |
34848523 |
a |
34848523 |
T |
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