View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4543_low_17 (Length: 302)
Name: NF4543_low_17
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 33401226 - 33400949
Alignment:
| Q |
17 |
aaaaatgatttcttggggattgcatatattctcattggtggactttccttggtgtactctctagttttcctacttatgtatttgatgaagccaaggtgag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33401226 |
aaaaatgatttcttggggattgcatatattctcattggtggactttccttggtgtactctctagttttcctacttatgtatttgatgaagccaaggtgag |
33401127 |
T |
|
| Q |
117 |
gaaaaactatacattcttcatcatctttatacattatggtttttctgtcattgcttttatgggtgaagatattttttgttgacgttgtttatattgttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33401126 |
gaaaaactatacattcttcatcatctttatacattatggtttttctgtcattgcttttatgggtgaagatattttttgttgacgttgtttatattgttgt |
33401027 |
T |
|
| Q |
217 |
gtgtgtatatgcagaccccttggagatccaagatacctgacttggaacaaaaattcaaaatgtttgaactgatgatgt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33401026 |
gtgtgtatatgcagaccccttggagatccaagatacctgacttggaacaaaaattcaaaatgtttgaactgatgatgt |
33400949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University