View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_30 (Length: 227)
Name: NF4543_low_30
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36864163 - 36863958
Alignment:
| Q |
1 |
agtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatcatcaacaatagtgtaataattctgaagaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36864163 |
agtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatcatcaacaatagtgtaataattctaaagaag |
36864064 |
T |
|
| Q |
101 |
caccgagttaccttgtcacgtttcagggaaagattttggagctggtgaatgagattgttttgttctttgagttgatgtgtccaatgttgtagttttctgt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36864063 |
cacttagttaccttgtcacgtttcagggaaagattttggagctggtgaatgagattgttttgttctttgagttgatgtgtccaatgtagtagttttctgt |
36863964 |
T |
|
| Q |
201 |
tgctgt |
206 |
Q |
| |
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|||||| |
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| T |
36863963 |
tgctgt |
36863958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 12281385 - 12281335
Alignment:
| Q |
21 |
tcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatca |
71 |
Q |
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| T |
12281385 |
tcaacccattagaggtaagagtcaaaccactatgcaagaaggaaataatca |
12281335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 35025723 - 35025783
Alignment:
| Q |
2 |
gtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaagg |
62 |
Q |
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| T |
35025723 |
gtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg |
35025783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37841021 - 37840951
Alignment:
| Q |
1 |
agtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatca |
71 |
Q |
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||||||||||||||||| ||||||||||| || | |||| | ||||||||||||||||||||||| ||||| |
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| T |
37841021 |
agtcaagagtgacaacagagtcaacccatcagtggtaagtgcaaaaccaccatgcaagaaggaaacaatca |
37840951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 37835398 - 37835329
Alignment:
| Q |
2 |
gtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatca |
71 |
Q |
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|||| ||||||||||| ||||||||| |||| ||||||| ||||||| |||||||||||||||||||| |
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| T |
37835398 |
gtcatgagtgacaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatca |
37835329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 37821308 - 37821242
Alignment:
| Q |
108 |
ttaccttgtcacgtttcagggaaagattttggagc---tggtgaatgagattgttttgttctttgag |
171 |
Q |
| |
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||||||||||| |||| |||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
37821308 |
ttaccttgtcaagtttgagggaaagattttggagctgatgatgaatgagatttttttgttctttgag |
37821242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 37821455 - 37821366
Alignment:
| Q |
2 |
gtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatcatcaacaatagtgtaataatt |
91 |
Q |
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||||||||||||| ||||||||| |||| |||| |||||| | | |||||| ||||||||||||||| |||||| | ||| |||||| |
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| T |
37821455 |
gtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaacaagattgtgataatt |
37821366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 37829697 - 37829608
Alignment:
| Q |
2 |
gtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatcatcaacaatagtgtaataatt |
91 |
Q |
| |
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||||||||||||| ||||||||| |||| |||| |||||| | | |||||| ||||||||||||||| |||||| | ||| |||||| |
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| T |
37829697 |
gtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaacaagattgtgataatt |
37829608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 37829550 - 37829485
Alignment:
| Q |
108 |
ttaccttgtcacgtttcagggaaagattttggagc---tggtgaatgagattgttttgttctttgag |
171 |
Q |
| |
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||||||||||| |||| ||||||||||| |||||| || ||||||||||| |||||||||||||| |
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| T |
37829550 |
ttaccttgtcaagtttgagggaaagattatggagctgatgatgaatgagatt-ttttgttctttgag |
37829485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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