View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4544-Insertion-1 (Length: 1020)
Name: NF4544-Insertion-1
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-1 |
 | |
|
| [»] scaffold0041 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 909; Significance: 0; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 909; E-Value: 0
Query Start/End: Original strand, 8 - 1006
Target Start/End: Complemental strand, 89325 - 88322
Alignment:
| Q |
8 |
gactagtttcgggtatataaaaaattggaatattaggacttagaaggttgtttggaaaagttggcattggaaattggccatcaattgggaaatctgggag |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89325 |
gactagtttcgggtaaataaaaaattggaatattaggacttagaaggttgtttggaaaagttggcattggaaattggccatcaattgggaaatctgggag |
89226 |
T |
|
| Q |
108 |
ttgaggcaatctcaatttcttccttggcggtatgaaaggcgaaagagggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89225 |
ttgaggcaatctcaatttcttccttggcggtatgaaaggcgaaagagggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttc |
89126 |
T |
|
| Q |
208 |
acatttttaagtaactcaggttcatcccatgtaacctaaaaagtatggcatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89125 |
acatttttaagtaactcaggttcatcccatgtaacctaaaaagtatgacatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatg |
89026 |
T |
|
| Q |
308 |
acagtaatatgcaataaaaaggacattgtgaaattcattagtatgaaatactaatctaattcacttcttacaattttattaggtaccaacaatgttccat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89025 |
acagtaatatgcaataaaaaggacattgtgaaattcattagtatgaaatactaatctaattcacttcttacaattttattaggtaccaacaatgttccat |
88926 |
T |
|
| Q |
408 |
tgtatctatattactactaacaaatactatttacattaacttgctaattttgaatgtattgaaagtaaaatatgtgaaggccctgatggatacctaatgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88925 |
tgtatctatattactactaacaaatactatttacattaacttgctaattttgaatgtattgaaagtaaaatatgtgaaggccctgatggatacctaatgt |
88826 |
T |
|
| Q |
508 |
atgatagcggatgtaggtataagatttttagcaaattctaattataggaagcttccaatttatggtactgatgaaaacttaaaaggattatgctttggaa |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88825 |
atgatagcgg-tgtaggtataagatttttagcaaattctaattataggaagcttccaatttatggtactgatgaaaacttaaaaggattatgctttggaa |
88727 |
T |
|
| Q |
608 |
aaagaaaatgttgcaagaatacacacattctatggtggaacaatagtgatttgtataaattccacaaggcatagctagcactatagtgccaatatagccg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
88726 |
aaagaaaatgttgcaagaatacacacattctatggtggaacaatagtgatttgtataaattccacaaggcatagctagcactatagtgccactatagccg |
88627 |
T |
|
| Q |
708 |
ctatatgacaacgttgaccaaaatgtaagtaaaatctaactaacttcaccgtatctaccgctattattctcaaaacattcatcaataaaacaagctctca |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88626 |
ctatatgacaacgttgaccaaaatgtaagtaaaatctaactaacttcaccgtatttaccgctattattctcaaaacattcatcaataaaacaagctctca |
88527 |
T |
|
| Q |
808 |
tgtaaattagttctagagggagtatataataaacatgtctatacctcgag-agtctccacatagaatcagaccatgacggatcagcaggctgaacagaag |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
88526 |
tgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtctccacatagaatcagaccatgacggatcagcagcctgaacagaag |
88427 |
T |
|
| Q |
907 |
caacag-tccgataaaccaacttatcc-tgatgagtcctcgggtttcatggccatctggaa-ctca-tccaggacacca-ctaatctgaggtgccattcc |
1001 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| || |||||||||| ||| |||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
88426 |
caacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctgaagtgccattcc |
88327 |
T |
|
| Q |
1002 |
aatta |
1006 |
Q |
| |
|
||||| |
|
|
| T |
88326 |
aatta |
88322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 738 - 1006
Target Start/End: Complemental strand, 96604 - 96330
Alignment:
| Q |
738 |
aaaatctaactaacttcaccgtatctaccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataat |
837 |
Q |
| |
|
||||| |||||||||| |||||| || | |||||||||| || ||||||||||||||||||| |||| || |||||| || ||||||||||| |||| |
|
|
| T |
96604 |
aaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaacaagttctcgtgcaaattaagtccagagggagtatgtaat |
96505 |
T |
|
| Q |
838 |
aaacatgtctatacctcgag-agtctccacatagaatcagaccatgacggatcagcaggctgaacagaagcaacag-tccgataaaccaacttatcc-tg |
934 |
Q |
| |
|
| || ||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| || |
|
|
| T |
96504 |
acacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttg |
96405 |
T |
|
| Q |
935 |
atgagtcctcgggtttcatggccatctggaa-ctca-tccaggacacca-ctaatctgaggtgccattccaatta |
1006 |
Q |
| |
|
|||||||||||| || |||| ||||| ||| |||| |||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
96404 |
atgagtcctcggtttcaatgggcatcttgaacctcattccaggacaccacctaatctgaagtgtgattccaatta |
96330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 97207 - 97081
Alignment:
| Q |
11 |
tagtttcgggtatataaaaaattggaatattaggacttagaaggttgtttggaaaagttggcattggaaattggccatcaattgggaaatctgggagttg |
110 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||| |
|
|
| T |
97207 |
tagtttcgggtaaatgaaaatttggaatattaggacttagaaggttgtttggaaaagttggcattgaaaattggctgtcaagtgggaaatttgggagttg |
97108 |
T |
|
| Q |
111 |
aggcaatctcaatttcttccttggcgg |
137 |
Q |
| |
|
||| |||||||||||| |||||||||| |
|
|
| T |
97107 |
aggtaatctcaatttcgtccttggcgg |
97081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 573 - 632
Target Start/End: Complemental strand, 97006 - 96946
Alignment:
| Q |
573 |
tactgatgaaaacttaaaaggattatgctttggaaaaa-gaaaatgttgcaagaatacaca |
632 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
97006 |
tactgatgaaaacttaaaaacattctgctctggaaaaaagaaaatgttgcaataatacaca |
96946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 909; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 909; E-Value: 0
Query Start/End: Original strand, 8 - 1006
Target Start/End: Original strand, 40876958 - 40877961
Alignment:
| Q |
8 |
gactagtttcgggtatataaaaaattggaatattaggacttagaaggttgtttggaaaagttggcattggaaattggccatcaattgggaaatctgggag |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40876958 |
gactagtttcgggtaaataaaaaattggaatattaggacttagaaggttgtttggaaaagttggcattggaaattggccatcaattgggaaatctgggag |
40877057 |
T |
|
| Q |
108 |
ttgaggcaatctcaatttcttccttggcggtatgaaaggcgaaagagggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877058 |
ttgaggcaatctcaatttcttccttggcggtatgaaaggcgaaagagggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttc |
40877157 |
T |
|
| Q |
208 |
acatttttaagtaactcaggttcatcccatgtaacctaaaaagtatggcatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877158 |
acatttttaagtaactcaggttcatcccatgtaacctaaaaagtatgacatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatg |
40877257 |
T |
|
| Q |
308 |
acagtaatatgcaataaaaaggacattgtgaaattcattagtatgaaatactaatctaattcacttcttacaattttattaggtaccaacaatgttccat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877258 |
acagtaatatgcaataaaaaggacattgtgaaattcattagtatgaaatactaatctaattcacttcttacaattttattaggtaccaacaatgttccat |
40877357 |
T |
|
| Q |
408 |
tgtatctatattactactaacaaatactatttacattaacttgctaattttgaatgtattgaaagtaaaatatgtgaaggccctgatggatacctaatgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877358 |
tgtatctatattactactaacaaatactatttacattaacttgctaattttgaatgtattgaaagtaaaatatgtgaaggccctgatggatacctaatgt |
40877457 |
T |
|
| Q |
508 |
atgatagcggatgtaggtataagatttttagcaaattctaattataggaagcttccaatttatggtactgatgaaaacttaaaaggattatgctttggaa |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877458 |
atgatagcgg-tgtaggtataagatttttagcaaattctaattataggaagcttccaatttatggtactgatgaaaacttaaaaggattatgctttggaa |
40877556 |
T |
|
| Q |
608 |
aaagaaaatgttgcaagaatacacacattctatggtggaacaatagtgatttgtataaattccacaaggcatagctagcactatagtgccaatatagccg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40877557 |
aaagaaaatgttgcaagaatacacacattctatggtggaacaatagtgatttgtataaattccacaaggcatagctagcactatagtgccactatagccg |
40877656 |
T |
|
| Q |
708 |
ctatatgacaacgttgaccaaaatgtaagtaaaatctaactaacttcaccgtatctaccgctattattctcaaaacattcatcaataaaacaagctctca |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877657 |
ctatatgacaacgttgaccaaaatgtaagtaaaatctaactaacttcaccgtatttaccgctattattctcaaaacattcatcaataaaacaagctctca |
40877756 |
T |
|
| Q |
808 |
tgtaaattagttctagagggagtatataataaacatgtctatacctcgag-agtctccacatagaatcagaccatgacggatcagcaggctgaacagaag |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40877757 |
tgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtctccacatagaatcagaccatgacggatcagcagcctgaacagaag |
40877856 |
T |
|
| Q |
907 |
caacag-tccgataaaccaacttatcc-tgatgagtcctcgggtttcatggccatctggaa-ctca-tccaggacacca-ctaatctgaggtgccattcc |
1001 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| || |||||||||| ||| |||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
40877857 |
caacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctgaagtgccattcc |
40877956 |
T |
|
| Q |
1002 |
aatta |
1006 |
Q |
| |
|
||||| |
|
|
| T |
40877957 |
aatta |
40877961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 738 - 1006
Target Start/End: Original strand, 40869678 - 40869952
Alignment:
| Q |
738 |
aaaatctaactaacttcaccgtatctaccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataat |
837 |
Q |
| |
|
||||| |||||||||| |||||| || | |||||||||| || ||||||||||||||||||| |||| || |||||| || ||||||||||| |||| |
|
|
| T |
40869678 |
aaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaacaagttctcgtgcaaattaagtccagagggagtatgtaat |
40869777 |
T |
|
| Q |
838 |
aaacatgtctatacctcgag-agtctccacatagaatcagaccatgacggatcagcaggctgaacagaagcaacag-tccgataaaccaacttatcc-tg |
934 |
Q |
| |
|
| || ||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40869778 |
acacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttg |
40869877 |
T |
|
| Q |
935 |
atgagtcctcgggtttcatggccatctggaa-ctca-tccaggacacca-ctaatctgaggtgccattccaatta |
1006 |
Q |
| |
|
|||||||||||| || |||| ||||| ||| |||| |||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
40869878 |
atgagtcctcggtttcaatgggcatcttgaacctcattccaggacaccacctaatctgaagtgtgattccaatta |
40869952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 40869075 - 40869201
Alignment:
| Q |
11 |
tagtttcgggtatataaaaaattggaatattaggacttagaaggttgtttggaaaagttggcattggaaattggccatcaattgggaaatctgggagttg |
110 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||| |
|
|
| T |
40869075 |
tagtttcgggtaaatgaaaatttggaatattaggacttagaaggttgtttggaaaagttggcattgaaaattggctgtcaagtgggaaatttgggagttg |
40869174 |
T |
|
| Q |
111 |
aggcaatctcaatttcttccttggcgg |
137 |
Q |
| |
|
||| |||||||||||| |||||||||| |
|
|
| T |
40869175 |
aggtaatctcaatttcgtccttggcgg |
40869201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 573 - 632
Target Start/End: Original strand, 40869276 - 40869336
Alignment:
| Q |
573 |
tactgatgaaaacttaaaaggattatgctttggaaaa-agaaaatgttgcaagaatacaca |
632 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
40869276 |
tactgatgaaaacttaaaaacattctgctctggaaaaaagaaaatgttgcaataatacaca |
40869336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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