View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4544-Insertion-11 (Length: 276)

Name: NF4544-Insertion-11
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4544-Insertion-11
NF4544-Insertion-11
[»] chr4 (1 HSPs)
chr4 (8-276)||(34012456-34012736)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 34012736 - 34012456
Alignment:
Q  8 tgatgaacttgaattgatagtgttgattgtcaaaaattagacagaagctatgttgatgtggatgatagaatgggaattgggaagatataattgataaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  34012736 tgatgaacttgaattgatagtgttgattgtcaaaaattagatagaagctatgttgatg------atagaatgggaattgggaagatataattgataaaat 34012643  T
Q  108 tggtaa------------------gcaattagacatagtcaagacttactttaagaagaagtaatgatatattggttggggaaaatatagttacaatatt 189  Q
    ||||||                  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34012642 tggtaatagttcagtaaatagttagcaattagacatggtcaagacttactttaagaagaagtaatgatatattggttggggaaaatatagttataatatt 34012543  T
Q  190 gaaaatatcaaagtctctttacaaatattagatgtttatgtagagtgcannnnnnncctccgcttcatatctttattttttaagaat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  34012542 gaaaatatcaaagtctctttacaaatattagatgtttatgtagagtgcatttttttcctccgcttcatatctttattttttaagaat 34012456  T

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