View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544-Insertion-13 (Length: 240)
Name: NF4544-Insertion-13
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 5752332 - 5752099
Alignment:
| Q |
7 |
atttattacttcttctagaaagagttattgaaagtgtaagtatgataagtctgatacttgatgtaaatagatctttgctcacacacacgcgggaatgtat |
106 |
Q |
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| T |
5752332 |
atttattacttcttctagaaagagttattgaaagtgtaagtatgataagtctgatacttgatgtaaatagatctttgctcacacacacgcggaaatgtat |
5752233 |
T |
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| Q |
107 |
gtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatattacaagatcatctttaaccatcattcgtataagaaattcaatttggg |
206 |
Q |
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| T |
5752232 |
gtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatattacaagatcatctttaaccatcattcgtctaagaaattcaatttggg |
5752133 |
T |
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| Q |
207 |
ttgaaaagaccgcacatttatgcaaaccatctca |
240 |
Q |
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| T |
5752132 |
ttgaaaagaccgcacatttatgcaaaccatctca |
5752099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 5747690 - 5747636
Alignment:
| Q |
106 |
tgtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatatt |
160 |
Q |
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| T |
5747690 |
tgtgtatcaattattgcaatgtctacgtgagtaacaataatcttttggacatatt |
5747636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 18682370 - 18682137
Alignment:
| Q |
7 |
atttattacttcttctagaaagagttattgaaagtgtaagtatgataagtctgatacttgatgtaaatagatctttgctcacacacacgcgggaatgtat |
106 |
Q |
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| T |
18682370 |
atttattacttcttctagaaagagttattgaaagtgtaagtatgataagtctgatacttgatgtaaatagatctttgctcacacacacgcggaaatgtat |
18682271 |
T |
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| Q |
107 |
gtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatattacaagatcatctttaaccatcattcgtataagaaattcaatttggg |
206 |
Q |
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| T |
18682270 |
gtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatattacaagatcatctttaaccatcattcgtctaagaaattcaatttggg |
18682171 |
T |
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| Q |
207 |
ttgaaaagaccgcacatttatgcaaaccatctca |
240 |
Q |
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| T |
18682170 |
ttgaaaagaccgcacatttatgcaaaccatctca |
18682137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 18677728 - 18677674
Alignment:
| Q |
106 |
tgtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatatt |
160 |
Q |
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| T |
18677728 |
tgtgtatcaattattgcaatgtctacgtgagtaacaataatcttttggacatatt |
18677674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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