View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544-Insertion-17 (Length: 148)
Name: NF4544-Insertion-17
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-17 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 15277734 - 15277815
Alignment:
| Q |
67 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttg |
148 |
Q |
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| T |
15277734 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttg |
15277815 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 34415470 - 34415409
Alignment:
| Q |
5 |
acaacttgtacctaataagacaaaaggcagcaccttatcattatttcaacaggtgcttgcca |
66 |
Q |
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| T |
34415470 |
acaaattgtacctaataagacaaaaggcagcaccttatcattatttcaacaggagcttgcca |
34415409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 18153346 - 18153427
Alignment:
| Q |
67 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttg |
148 |
Q |
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| T |
18153346 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttg |
18153427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 12415336 - 12415417
Alignment:
| Q |
67 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttg |
148 |
Q |
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| T |
12415336 |
tatctataacattggattgaagatcacccaaatcatatacatctctaaccttagcgtgaacaaagacaaaccaatcattttg |
12415417 |
T |
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