View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544-Insertion-3 (Length: 618)
Name: NF4544-Insertion-3
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 7 - 618
Target Start/End: Original strand, 1559348 - 1559959
Alignment:
| Q |
7 |
agtttttacttcaacgttttgatttatgtcattgattgactttgtaggacgttcacaactatgtcactgagattatgaataattcatcaagttcgtcgac |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
1559348 |
agtttttacttcaacgttttgatttatgtcattgattgactttgtaggacgttcacaactatgtccctgagattatgaataattcatcaagttcgccgac |
1559447 |
T |
|
| Q |
107 |
tctgtcaaattttactcatattagtcattatgagaatatgttaagggactaaattgtcagtaagcggttaaatgtagagactaattgatagtaagtggtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559448 |
tctgtcaaattttactcatattagtcattatgagaatatgttaagggactaaattgtcagtaagcggttaaatgtagagactaattgatagtaagtggtt |
1559547 |
T |
|
| Q |
207 |
aaatataagaatcaactggacagattaatagagtcaggtcctgtttgagagcgctctacaacatcagggactaatttggtggattactcgtgtggtatat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559548 |
aaatataagaatcaactggacagattaatagagtcaggtcctgtttgagagcgctctacaacatcagggactaatttggtggattactcgtgtggtatat |
1559647 |
T |
|
| Q |
307 |
gtagctctttctctgaatgcgttaaaaatcgtctgattttgattttgattttgattatgttagtgcatgatacgattgttctactaatcattggtcttgt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1559648 |
gtagctctttctctgaatgcgttaaaaatcgtctgattttgattttgattttgattatgttagtacatgatacgattgttctactaatcattggtcttgt |
1559747 |
T |
|
| Q |
407 |
tgataatgttaatattaattgtaactaggattagtttgtcacaatagcttggaattaattacaatttagttgcaggtagtttctcgttgataatgtgtat |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1559748 |
tgataatgttaatattaattgtaactaggattagtttgtcacaatagcttggaattaattacaatttagttacaggtagtttctcgttgataatgtgtat |
1559847 |
T |
|
| Q |
507 |
aaccgttgtaatttaggcaaactattacaagtttaggagtcgagtctacggaggctccacgagtttagctagattctcgagtttgacaaggttgatcact |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1559848 |
aaccgttgtaatttaggcaaactattacaagtttaggattcgagtctacggaggctccacgagtttagctagactctcgaatttgacaaggttgatcact |
1559947 |
T |
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| Q |
607 |
caattttctgta |
618 |
Q |
| |
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|||||||||||| |
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| T |
1559948 |
caattttctgta |
1559959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 683465 - 683410
Alignment:
| Q |
188 |
taattgatagtaagtggttaaatataagaatcaactggacagattaatagagtcag |
243 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
683465 |
taattgataataagtggttaaatataaggatcaacttgacaatttaatagagtcag |
683410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 16494602 - 16494493
Alignment:
| Q |
104 |
gactctgtcaaattttactcatattagtcattatgagaatatgttaagggactaaattgtcagtaagcggttaaatgtagagac-taattgatagtaagt |
202 |
Q |
| |
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|||| ||| ||||||||||||||| |||||||| ||| |||||| || |||||||||| ||||||||||||||| || ||| |||||||||||||| |
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| T |
16494602 |
gactatgtgaaattttactcatataagtcattacaagagtatgtt-agagactaaattgatagtaagcggttaaatacagcgacaaaattgatagtaagt |
16494504 |
T |
|
| Q |
203 |
ggttaaatata |
213 |
Q |
| |
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|||||||||| |
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| T |
16494503 |
tgttaaatata |
16494493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 22994142 - 22994088
Alignment:
| Q |
187 |
ctaattgatagtaagtggttaaatataagaatcaactggacagattaatagagtc |
241 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| ||||| ||||||||||| |
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|
| T |
22994142 |
ctaattgatagtaaatagttaaatataaggatcaacttgacagtttaatagagtc |
22994088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 23794256 - 23794310
Alignment:
| Q |
187 |
ctaattgatagtaagtggttaaatataagaatcaactggacagattaatagagtc |
241 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| ||||| ||||||||||| |
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| T |
23794256 |
ctaattgatagtaaatagttaaatataaggatcaacttgacagtttaatagagtc |
23794310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 1896301 - 1896195
Alignment:
| Q |
102 |
tcgactctgtcaaattttactcatattagtcattatgagaatatgttaagggactaaattgtcagtaagcggttaaatgtagaga-ctaattgatagtaa |
200 |
Q |
| |
|
|||||||||| |||||| |||||||||| || || ||||||||||| ||||||||||||| ||||| ||| |||| |||||| | |||||||||||| |
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| T |
1896301 |
tcgactctgttaaattt-actcatattaatcctttaaagaatatgtta-gggactaaattgttagtaatcggataaacttagagaccaaattgatagtaa |
1896204 |
T |
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| Q |
201 |
gtggttaaa |
209 |
Q |
| |
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|| |||||| |
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| T |
1896203 |
gtagttaaa |
1896195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 19050520 - 19050572
Alignment:
| Q |
190 |
attgatagtaagtggttaaatataagaatcaactggacagattaatagagtca |
242 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||| |||||||||||| |
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| T |
19050520 |
attgatagtaagtggttaaatataaggacgaacttgacaatttaatagagtca |
19050572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 25417035 - 25417003
Alignment:
| Q |
103 |
cgactctgtcaaattttactcatattagtcatt |
135 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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| T |
25417035 |
cgactctgtcaaattttacacatattagtcatt |
25417003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 35994213 - 35994129
Alignment:
| Q |
102 |
tcgactctgtcaaattttactcatattagtcattatgagaatatgttaagggactaaattgtcagtaagcggttaaatgtagagac |
187 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||| | |||||| || |||||||||| |||||| ||||||| ||||||| |
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|
| T |
35994213 |
tcgactctgtcaaattttgctcatatttgtcattttgaaagtatgtt-agagactaaattgatagtaagtggttaaaaatagagac |
35994129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 23058381 - 23058332
Alignment:
| Q |
189 |
aattgatagtaagtggttaaatataagaatcaactggacagattaataga |
238 |
Q |
| |
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||||||||||||||||||||||||| | | ||||| ||||||||||||| |
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|
| T |
23058381 |
aattgatagtaagtggttaaatatagggaccaacttaacagattaataga |
23058332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 6556704 - 6556608
Alignment:
| Q |
113 |
aaattttactcatattagtcattatgagaatatgttaagggactaaattgtcagtaagcggttaaatgtagagactaa-ttgatagtaagtggttaaa |
209 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| | || |||||||||| ||||||||||||||| || | || || |||||||||||| |||||| |
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| T |
6556704 |
aaattttactcatattagtcattccgagagtatgct-agagactaaattgatagtaagcggttaaatataaaaaccaagttgatagtaagttgttaaa |
6556608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 26393027 - 26392975
Alignment:
| Q |
189 |
aattgatagtaagtggttaaatataagaatcaactggacagattaatagagtc |
241 |
Q |
| |
|
|||||||||||| |||||||||||| | | ||||| ||||| ||||||||||| |
|
|
| T |
26393027 |
aattgatagtaaatggttaaatatagggaccaacttgacagtttaatagagtc |
26392975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 60188 - 60152
Alignment:
| Q |
105 |
actctgtcaaattttactcatattagtcattatgaga |
141 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
60188 |
actctatcaaattttactcatattagtcattttgaga |
60152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 32659965 - 32659790
Alignment:
| Q |
43 |
tgactttgtaggacgttcacaactatgtcactgagattatgaataattcatcaagttcgtcgactctgtcaaattttactcatattagtcattatgagaa |
142 |
Q |
| |
|
|||||||||| |||| || ||| || ||| || ||||||||||| || | ||| || | ||||||||||||||| | ||||||||| || ||||| |
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|
| T |
32659965 |
tgactttgtatgacgctctcaaataggtctctaggattatgaatattttacaaaggtcattgactctgtcaaatttgaggcatattagttcttctgagat |
32659866 |
T |
|
| Q |
143 |
tatgttaagggactaaattgtcagtaagcggttaaatgtagagactaa-ttgatagtaagtggtt-aaatataagaa |
217 |
Q |
| |
|
|||||| ||| ||||||||| ||| || ||||||| ||||||| || |||||||||||| ||| ||||||||||| |
|
|
| T |
32659865 |
tatgtt-aggaactaaattgatagtgaggggttaaacatagagaccaagttgatagtaagttgttaaaatataagaa |
32659790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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