View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544-Insertion-4 (Length: 616)
Name: NF4544-Insertion-4
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 8328935 - 8329191
Alignment:
| Q |
8 |
tttcttgcgcaaacaactttttatcttttacaggaccgtttcaaagtatctgctatttttagnnnnnnngtatattaagaatgagtcggataactcgaga |
107 |
Q |
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| T |
8328935 |
tttcttgcgcaaacaactttttattttttaccggaccgtttcaaagtatctgctatttttt-aaaaaaagtatattaaggatgagtcggataactcgaga |
8329033 |
T |
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| Q |
108 |
gttaattttaacccatcatgacttgaaattatgggtgaaaataggtcaaacaagcaatacttagtttataaaaatgaagcttgaactgatatattatcat |
207 |
Q |
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| T |
8329034 |
gttaattttagcctatcatgacttgaaattatgggtgaaaataggtcagacaagtaatacttagtttataaaaatgaagtttgaact--tctattatcat |
8329131 |
T |
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| Q |
208 |
ctgtcaaaaactttaatttaagtttgattcaatatgacctttttaaaatctttcccggat |
267 |
Q |
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| T |
8329132 |
ctgtcaaaaactttaatttaagtttgacttaatatgacctttttaaaatctttcctggat |
8329191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 392 - 613
Target Start/End: Original strand, 8329360 - 8329577
Alignment:
| Q |
392 |
taaaaaattcgagtgagactattttacttttactaaatgagatgagatgagataggaataaccaaacttgtaagtagaggagaccatagtccgagtcgat |
491 |
Q |
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| T |
8329360 |
taaaaaattcgagtgagactattttacttttactaaatgagatgagat-----aggcataaccaaacttgcaagtagaggagaccatagtccgagtcgat |
8329454 |
T |
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| Q |
492 |
tagtaatt-ctcagctaatcacaaattactctatcaagtaaatctctttggatatagtgcgttagcattttcatttttcatgagttgaggtaagtagaca |
590 |
Q |
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| T |
8329455 |
tagtaattgctcacctaatcacaaattactctatcaagtaaattactttggatatagtgcgttagcattttcatttttcatgagttgagataagtagaca |
8329554 |
T |
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| Q |
591 |
tacgatataatctattactttgg |
613 |
Q |
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| T |
8329555 |
tgcgatataatctattactttgg |
8329577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 382
Target Start/End: Original strand, 8329283 - 8329311
Alignment:
| Q |
354 |
aaatatcatgaattttgtgttaaactttt |
382 |
Q |
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| T |
8329283 |
aaatatcatgaattttgtgttaaactttt |
8329311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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