View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544-Insertion-5 (Length: 440)
Name: NF4544-Insertion-5
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 7423926 - 7424349
Alignment:
| Q |
8 |
aaaagtgcacgttctctcatccgtactttacttatacaatccaattctattttgttttaaacttttgatttataggtgaagagaactttggtaatataga |
107 |
Q |
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| T |
7423926 |
aaaagtgcacgttctctcatccgtactttact-atacaatccaattctattttattttaaacttttgatttataggtgaagagaactttggtaatgtaga |
7424024 |
T |
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| Q |
108 |
gtttcatcgtgagataaatattattcgatcaataactgtttgatatgtaagttaaattcaatttatttttattttaaaccattcattgatagtgaagttt |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7424025 |
gtttgatcgtgagataaatattattcgatcaataactgtttgatatgtaagttaaactcaatttatttttattttaaaccattcattgatagtgaagttt |
7424124 |
T |
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| Q |
208 |
attaacaagctgaattccacc----aattgattataccgtccaattctatgcttaagtagattttaattcaaccattaacaatagt--actaatactgtt |
301 |
Q |
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| T |
7424125 |
attaaccagctgaattccaccacttaattgattataccgtccaattctatgcttaagtagattttaattcaaccattaacaatagtacactaatactgtt |
7424224 |
T |
|
| Q |
302 |
tcctattatgattccaaaagtatttgttatcagtatttgttattaggggcccgataaaacaaatcatctctctttcaccgactataagactactatatta |
401 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7424225 |
tcctattatgattccaaa-------------agtatttgttattaggggcccgataaaacaaatcatctctctttcaccaactataagactactatatta |
7424311 |
T |
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| Q |
402 |
tcccatccaatattaaaaaactactacaccatgcatta |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7424312 |
tcccatccaatattaaaaaactactacaccatgcatta |
7424349 |
T |
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