View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4544-Insertion-6 (Length: 427)
Name: NF4544-Insertion-6
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 3110325 - 3110098
Alignment:
| Q |
8 |
aatgtgagtggtcttcttcatcctattagacgtaaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3110325 |
aatgtgagtggtcttcttcatcctattagacgtaaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaa |
3110226 |
T |
|
| Q |
108 |
tgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgcttg-aaagtaaata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3110225 |
tgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgcttgtgaagtaaata |
3110126 |
T |
|
| Q |
207 |
aataattgcttctcacttgtaattactc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3110125 |
aataattgcttctcacttgtaattactc |
3110098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 26271460 - 26271681
Alignment:
| Q |
8 |
aatgtgagtggtcttcttcatcctattagacgtaaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26271460 |
aatgtgagtggtcttcttcatcctattagacgtaaagggaatcatgtccttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaa |
26271559 |
T |
|
| Q |
108 |
tgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgcttga-aagtaaata |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||| |
|
|
| T |
26271560 |
tgggaatgtatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttaggtgcatgagaatcaaata |
26271659 |
T |
|
| Q |
207 |
aataattgcttctcacttgtaa |
228 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
26271660 |
aataattgattctcacttgtaa |
26271681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 44064981 - 44065123
Alignment:
| Q |
51 |
atgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaa |
150 |
Q |
| |
|
|||| ||||| || |||||| || ||||||| |||||| |||||||| | |||||||| || | || || || |||||| | |||||||||||||| |
|
|
| T |
44064981 |
atgtccttgcacagaatcttctgtatttacttaaaaaccagttggcaaggaagcaaatggggatagaaggcaggaaaaaggtggagaggatgtatttgaa |
44065080 |
T |
|
| Q |
151 |
ggagcacatgtatagtaaatttgtagaggttcttgttacgtgc |
193 |
Q |
| |
|
| | |||||||||| |||||||| |||||| |||||| |||| |
|
|
| T |
44065081 |
gcaacacatgtataagaaatttgttgaggttattgttaggtgc |
44065123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University