View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544-Insertion-8 (Length: 462)
Name: NF4544-Insertion-8
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 105 - 462
Target Start/End: Complemental strand, 47593550 - 47593186
Alignment:
| Q |
105 |
cacctcatattcgaatggaaatatgtttttcaaccctataaatatataaactttcatttttcgtctctacaaatattaaagattaaacggttaatttatt |
204 |
Q |
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| T |
47593550 |
cacctcatattagaatggaaatatgtttttcaaccctataaatatataaactttcatttttcgtctctacaaatattaaagattaaacggttaatttatt |
47593451 |
T |
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| Q |
205 |
aagttaatagtattttaaggtatcaacaatgtcatgtcataaataaaaagtcacttgacagtgacacttgccacgtcggacaaatgacattatagttgac |
304 |
Q |
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| T |
47593450 |
aagttgatagtattttaaggtatcaacaatgtcatgtcataaataaaaagtcacttgacagtgacacttgccacgtcggacaaatgacattatagttgac |
47593351 |
T |
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| Q |
305 |
aagtgatgac-aaaagcagtaacaaataatatttgagggaagaaaattggatggaaatttttataaggtaaa------aattgttatatttatagggacg |
397 |
Q |
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| T |
47593350 |
aagtgatgacaaaaagcagtaacaaataatatttgagggaagaaaattggatggaaatttttatagggtaaaaacaagaattgttatatttatagggacg |
47593251 |
T |
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| Q |
398 |
-aaaacgtatttaatagtnnnnnnngcgatgtaggaaataattgaaaacttaccttgttcccgcaa |
462 |
Q |
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| T |
47593250 |
aaaaacgtatttaa-cctaaaaaaagcgatgtaggaaataattgaaaacttaccttgttcccgcaa |
47593186 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 489321 - 489368
Alignment:
| Q |
176 |
aatattaaagattaaacggttaatttattaagttaatagtattttaag |
223 |
Q |
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| T |
489321 |
aatattaaagattaaacagttaaattattaagttaatgatattttaag |
489368 |
T |
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