View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4544R-Insertion-1 (Length: 1014)

Name: NF4544R-Insertion-1
Description: NF4544R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4544R-Insertion-1
NF4544R-Insertion-1
[»] scaffold0256 (1 HSPs)
scaffold0256 (12-225)||(11151-11365)
[»] chr3 (5 HSPs)
chr3 (275-534)||(13470683-13470942)
chr3 (311-497)||(51764427-51764613)
chr3 (313-431)||(51113770-51113888)
chr3 (323-431)||(51120892-51121000)
chr3 (779-861)||(51764930-51765011)
[»] chr6 (31 HSPs)
chr6 (12-217)||(16580363-16580569)
chr6 (12-217)||(16614811-16615017)
chr6 (286-536)||(6415853-6416103)
chr6 (12-217)||(16874223-16874429)
chr6 (12-224)||(16977446-16977658)
chr6 (275-497)||(6589274-6589496)
chr6 (311-489)||(6585224-6585402)
chr6 (99-217)||(16572377-16572495)
chr6 (311-509)||(7994169-7994367)
chr6 (311-428)||(6402855-6402972)
chr6 (286-431)||(6432153-6432298)
chr6 (286-431)||(6394856-6395001)
chr6 (311-428)||(7119152-7119269)
chr6 (311-428)||(7131630-7131747)
chr6 (311-497)||(6594593-6594779)
chr6 (311-429)||(14820687-14820805)
chr6 (310-431)||(6409998-6410119)
chr6 (286-431)||(6423209-6423354)
chr6 (312-424)||(6596916-6597028)
chr6 (320-428)||(14802331-14802439)
chr6 (318-431)||(19632431-19632544)
chr6 (318-497)||(14818308-14818487)
chr6 (115-173)||(16691581-16691639)
chr6 (311-428)||(10579723-10579840)
chr6 (460-513)||(16569390-16569443)
chr6 (286-502)||(6426432-6426648)
chr6 (508-544)||(16566761-16566797)
chr6 (330-431)||(11936281-11936382)
chr6 (330-431)||(11948261-11948362)
chr6 (311-352)||(8913971-8914012)
chr6 (330-431)||(9411347-9411448)
[»] chr7 (3 HSPs)
chr7 (275-616)||(10614401-10614741)
chr7 (12-223)||(48298742-48298955)
chr7 (312-497)||(15092139-15092324)
[»] chr2 (4 HSPs)
chr2 (13-224)||(21629113-21629326)
chr2 (12-223)||(233626-233839)
chr2 (311-427)||(1037651-1037767)
chr2 (323-431)||(45245084-45245192)
[»] chr1 (5 HSPs)
chr1 (12-223)||(7391656-7391869)
chr1 (311-428)||(19468486-19468603)
chr1 (792-881)||(19468981-19469069)
chr1 (351-428)||(43634902-43634979)
chr1 (313-422)||(52082582-52082691)
[»] chr8 (5 HSPs)
chr8 (313-431)||(18315262-18315380)
chr8 (330-428)||(27922503-27922601)
chr8 (312-431)||(32151293-32151412)
chr8 (348-475)||(17628038-17628165)
chr8 (325-416)||(17636402-17636493)
[»] chr5 (6 HSPs)
chr5 (314-562)||(20478072-20478315)
chr5 (279-426)||(41889509-41889656)
chr5 (320-431)||(37937879-37937990)
chr5 (330-428)||(32267470-32267568)
chr5 (331-428)||(41901542-41901639)
chr5 (326-428)||(38267558-38267660)
[»] chr4 (19 HSPs)
chr4 (310-430)||(1548409-1548530)
chr4 (323-431)||(1524485-1524593)
chr4 (286-428)||(546908-547050)
chr4 (311-431)||(53761759-53761877)
chr4 (324-431)||(1513407-1513514)
chr4 (348-430)||(640908-640990)
chr4 (308-430)||(1552751-1552873)
chr4 (311-427)||(55908715-55908831)
chr4 (351-430)||(55505135-55505214)
chr4 (324-430)||(8187091-8187197)
chr4 (325-431)||(12121458-12121564)
chr4 (325-428)||(8184031-8184134)
chr4 (310-367)||(21834364-21834421)
chr4 (325-409)||(1519143-1519227)
chr4 (314-490)||(1537757-1537933)
chr4 (311-426)||(532186-532301)
chr4 (348-431)||(3438590-3438672)
chr4 (354-431)||(1508033-1508110)
chr4 (324-397)||(1600445-1600518)
[»] scaffold0295 (1 HSPs)
scaffold0295 (311-424)||(611-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (351-430)||(39177-39256)


Alignment Details
Target: scaffold0256 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 11151 - 11365
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacatttcaggaggaccgttga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11151 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacatttcaggaggaccgttga 11250  T
Q  112 atg-ttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccag 210  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  11251 atgtttttttgtcactgatctcgagcaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacattggctgcaatattgggaacttccag 11350  T
Q  211 tagcatagtagatac 225  Q
    |||||||| ||||||    
T  11351 tagcatagcagatac 11365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 1e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 275 - 534
Target Start/End: Original strand, 13470683 - 13470942
Alignment:
Q  275 taagattagatatttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcataca 374  Q
    |||||||||  ||||||||||| |||  |||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||  |||||    
T  13470683 taagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaataca 13470782  T
Q  375 aaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtga 474  Q
    |||||| | ||| ||||||||||  | |||||||||||||||||||||||||||||| || || ||||||||||| | | ||||||| | ||||||||||    
T  13470783 aaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatgtcacagaagagggagtga 13470882  T
Q  475 aatatttggtagaaaacttcacaaaactcaaagagcatggatatcttctttactagtatt 534  Q
    || || ||||||| |||| |||| | || | |||||||||||||||||||||||||||||    
T  13470883 aacatgtggtagagaactgcacacagctaagagagcatggatatcttctttactagtatt 13470942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 311 - 497
Target Start/End: Original strand, 51764427 - 51764613
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||||||||||| ||||||| |||||| ||  ||||||||||  |||||||   |||||| ||||| ||| |||||||||| |  |||||||||    
T  51764427 agtgaagctacttggaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaag 51764526  T
Q  411 aattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaacttcaca 497  Q
    |||||||| |||||||||||| || || | |||| |||||| | |||||   || ||||||||||| || |||| ||||||| ||||    
T  51764527 aattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcaca 51764613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 51113770 - 51113888
Alignment:
Q  313 tgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaa 412  Q
    |||||||||||||||| ||||||| || ||||||  ||||||||||  |||||||  |||||| |||||| ||| |||||||||| || ||||| ||||     
T  51113770 tgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagag 51113869  T
Q  413 ttgttgtgggcttttgcaa 431  Q
    |||||||||||||||||||    
T  51113870 ttgttgtgggcttttgcaa 51113888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 51120892 - 51121000
Alignment:
Q  323 tggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtggg 422  Q
    |||||| ||||||| ||||| ||| |||||||||||||||||||| |||||||  ||||| ||| ||| ||| || || |||||||||| |||| |||||    
T  51120892 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 51120991  T
Q  423 cttttgcaa 431  Q
    |||||||||    
T  51120992 cttttgcaa 51121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 779 - 861
Target Start/End: Original strand, 51764930 - 51765011
Alignment:
Q  779 gcaatgacatgtttataaggcagacttttggccttccgccatcaacatcatttggggtgttatatgccgttttaaactgtttt 861  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||| || |||||| | ||||||| |||||||| ||||||    
T  51764930 gcaatgacatgtttatatggcggatttttggccttccgccatcaacaccacttgggg-gctatatgcagttttaaattgtttt 51765011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 16580569 - 16580363
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  16580569 aagagatgcaatattgtcacaagccttgtggaagtctccattgataagaagcattgtgacaaccatgacatgatccttaacattttcgggaggacagttg 16580470  T
Q  111 aatgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccag 210  Q
    ||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||| ||||| | ||||||||| | |||||||||||   ||||||||     
T  16580469 aatgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattagctgcaatattgaaaacttccaa 16580370  T
Q  211 tagcata 217  Q
    |||||||    
T  16580369 tagcata 16580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 16614811 - 16615017
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  16614811 aagagatgcaatattgtcacaagccttgtggaagtctccattgataagaagcattgtgacaaccatgacatgatccttaacattttcgggaggacagttg 16614910  T
Q  111 aatgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccag 210  Q
    ||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||| ||||| | ||||||||| | |||||||||||   ||||||||     
T  16614911 aatgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattagctgcaatattgaaaacttccaa 16615010  T
Q  211 tagcata 217  Q
    |||||||    
T  16615011 tagcata 16615017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 286 - 536
Target Start/End: Complemental strand, 6416103 - 6415853
Alignment:
Q  286 atttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacga 385  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||||  ||||||||||| | ||    
T  6416103 atttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatga 6416004  T
Q  386 tcaaacactctacgttatctcaaagaattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggta 485  Q
    | |||| ||||| || ||||||||||||||| | |||||||||||| || || ||||| ||||||| | ||||||| | | |||||||||| || |||||    
T  6416003 taaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggta 6415904  T
Q  486 gaaaacttcacaaaactcaaagagcatggatatcttctttactagtattct 536  Q
    || |||| |||| |||| | |||||||||||||||||||||||||||||||    
T  6415903 gagaactgcacacaactaagagagcatggatatcttctttactagtattct 6415853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 16874429 - 16874223
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  16874429 aagagatgcaataatgtcacaagccttgtggaagtctccattgataagaagcattgtgacaaccatgacatgatccataacattttcgggaggaccgttg 16874330  T
Q  111 aatgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccag 210  Q
    ||||||||||||||||||||||||| ||| |   |||||| ||||||||||||||| ||||| | ||| ||||| |||||||||||||   ||||||||     
T  16874329 aatgttttttgtcactgatctcgagcaagtggctgaaattcttactgatgatcttacgcttcacgtcaggaacattggctgcaatattgaaaacttccaa 16874230  T
Q  211 tagcata 217  Q
    |||||||    
T  16874229 tagcata 16874223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 16977446 - 16977658
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||| |||| ||  ||||| ||    
T  16977446 aagagatgcaatattgtcaaaagccttgtgcaagtccccattcataagaagccttgttacaaccatgacatgatccttaacattttctggtagaccgctg 16977545  T
Q  111 aatgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccag 210  Q
    ||| || ||| ||||||||||||| ||||| | |||||||  || ||||||||||||||||||| || |||||| |||||||| || | ||||||| ||     
T  16977546 aattttgtttatcactgatctcgaaaaagcaatggaaattcgtattgatgatcttatgcttcgcgtcttgaacattggctgcatta-tgggaacttgcat 16977644  T
Q  211 tagcatagtagata 224  Q
    |||||||| |||||    
T  16977645 tagcatagaagata 16977658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 275 - 497
Target Start/End: Original strand, 6589274 - 6589496
Alignment:
Q  275 taagattagatatttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcataca 374  Q
    |||||||||  ||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||  |||||    
T  6589274 taagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaataca 6589373  T
Q  375 aaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtga 474  Q
    || ||| | ||| ||||||| ||  | |||||||| ||||||   |||||| ||||| ||  | || |||||||| |   ||||||  ||||||||||||    
T  6589374 aatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgtaattatgtcacggaggagggagtga 6589473  T
Q  475 aatatttggtagaaaacttcaca 497  Q
    || || |||||||||||| ||||    
T  6589474 aacatgtggtagaaaactgcaca 6589496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 311 - 489
Target Start/End: Original strand, 6585224 - 6585402
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||||||||||| |||||| ||||| || | |||||||| |||||||||||  ||||||||||||| ||| |||||||||| || |||||||||    
T  6585224 agtgaagctacttggaataaactttttagttacccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaag 6585323  T
Q  411 aattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaa 489  Q
    | ||||| || ||||||| || || || |  ||  |||||||| ||||||| || ||||| ||||| || |||||||||    
T  6585324 agttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacagagaagggactgaaacatgtggtagaaa 6585402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 16572495 - 16572377
Alignment:
Q  99 ggaggaccgttgaatgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatatt 198  Q
    |||| |||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||| ||||| | ||||||| | |||||||||||||    
T  16572495 ggagaaccgttgaatgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaatattggctgcaatatt 16572396  T
Q  199 cggaacttccagtagcata 217  Q
       |||||||| |||||||    
T  16572395 gaaaacttccaatagcata 16572377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 311 - 509
Target Start/End: Original strand, 7994169 - 7994367
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||||| ||||| |||||||||||||| ||  | |||||||||||| ||||  |||||| |||| | ||  ||||||| || || |||||||||    
T  7994169 agtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaag 7994268  T
Q  411 aattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaacttcacaaaactcaaagag 509  Q
    ||||||| ||| ||||||||| || || ||||||||||| |   ||| ||  |||||||||||||| || |||||||||||| |||  |||| ||||||    
T  7994269 aattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagag 7994367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 6402972 - 6402855
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||||||||||| ||||||| ||||||| |  | || ||||||||||||||  |||| |||||||| ||| |||||||||| || |||||||||    
T  6402972 agtgaagctacttggaataaactttgcagttccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaag 6402873  T
Q  411 aattgttgtgggcttttg 428  Q
    |||||| |||||||||||    
T  6402872 aattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 6432298 - 6432153
Alignment:
Q  286 atttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacga 385  Q
    ||||||||||| |||  |||| | |||||||||||| |||||| ||||||| |||||||||  || ||||||||||||||||  ||||||  ||||| ||    
T  6432298 atttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatga 6432199  T
Q  386 tcaaacactctacgttatctcaaagaattgttgtgggcttttgcaa 431  Q
    | ||||||| || || |||| ||||||||||||||||||| |||||    
T  6432198 tgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaa 6432153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 6395001 - 6394856
Alignment:
Q  286 atttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacga 385  Q
    ||||||||||| | ||||||  | ||||||| |||| |||||| ||||||| ||||||| |  |||||||||||||||||||  ||||||  ||||| ||    
T  6395001 atttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatga 6394902  T
Q  386 tcaaacactctacgttatctcaaagaattgttgtgggcttttgcaa 431  Q
    | |||| || |  || ||||||||||||||||||||||||||||||    
T  6394901 tgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 6394856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 7119269 - 7119152
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||||||||||| |||||||| |||| | |  |||||||||||||||||||  |||| |||||||| ||| |||||||| | || ||||| |||    
T  7119269 agtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaag 7119170  T
Q  411 aattgttgtgggcttttg 428  Q
    |||||||| |||||||||    
T  7119169 aattgttgcgggcttttg 7119152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 7131747 - 7131630
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||||||||||| |||||||| |||| | |  |||||||||||||||||||  |||| |||||||| ||| |||||||| | || ||||| |||    
T  7131747 agtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaag 7131648  T
Q  411 aattgttgtgggcttttg 428  Q
    |||||||| |||||||||    
T  7131647 aattgttgcgggcttttg 7131630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 311 - 497
Target Start/End: Original strand, 6594593 - 6594779
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    ||||||||||| |||||| |||||| ||||||||||  ||||||||||| |||||||  ||||| ||||||| ||| | |||||    || |||||||||    
T  6594593 agtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaag 6594692  T
Q  411 aattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaacttcaca 497  Q
    ||||||||||||||||| ||| ||| | | |||  ||||||   | ||||| |||||||||  ||| || |||||||||||| ||||    
T  6594693 aattgttgtgggcttttacaactaaaactagaaaattgtgatcatctcacagaggagggagccaaacatgtggtagaaaactgcaca 6594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 311 - 429
Target Start/End: Complemental strand, 14820805 - 14820687
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||| |||| |||||| ||||||| ||||||||| || |||||||||||||| ||  |||||||||||||  || ||||||| ||  | ||||| |||    
T  14820805 agtgaaactacatggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaag 14820706  T
Q  411 aattgttgtgggcttttgc 429  Q
    |||||||||||||||||||    
T  14820705 aattgttgtgggcttttgc 14820687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 6410119 - 6409998
Alignment:
Q  310 aagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaa 409  Q
    |||||||||||| |||||| ||||||| |||||||||  || |||||||||||| |||  ||||||  ||||| ||| |||| || || || ||||||||    
T  6410119 aagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaa 6410020  T
Q  410 gaattgttgtgggcttttgcaa 431  Q
    |||||||||| |||||||||||    
T  6410019 gaattgttgtcggcttttgcaa 6409998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 6423354 - 6423209
Alignment:
Q  286 atttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacga 385  Q
    ||||||||||| |||  ||| || |||||||||||| || ||| ||||||  |||||||||  |||||||||||||||||||  ||||||  |||  |||    
T  6423354 atttgaacttagcctattgtgaacaagtgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcga 6423255  T
Q  386 tcaaacactctacgttatctcaaagaattgttgtgggcttttgcaa 431  Q
    | |||||||||| |  |||||||||| |||||||||| ||||||||    
T  6423254 taaaacactctatgcgatctcaaagagttgttgtgggattttgcaa 6423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 6596916 - 6597028
Alignment:
Q  312 gtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaaga 411  Q
    ||||||| ||||| ||| ||||||| | ||||| |  |||||||||||||||||||   |||||| ||||| ||| |||||||||||| |||||||||||    
T  6596916 gtgaagcgacttgaaataaactttgaaattccccagctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaaga 6597015  T
Q  412 attgttgtgggct 424  Q
    |||||| ||||||    
T  6597016 attgttctgggct 6597028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 14802439 - 14802331
Alignment:
Q  320 acttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgt 419  Q
    ||||||||  ||||||| |||||||||  |||| |||||||| |||||  ||||||||||||| ||| |||||||||| || || |||||||||||||||    
T  14802439 acttggaactaactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgt 14802340  T
Q  420 gggcttttg 428  Q
    || ||||||    
T  14802339 ggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 19632544 - 19632431
Alignment:
Q  318 ctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgtt 417  Q
    ||||||||||| |||||| ||||||||||  | ||||||||| |||||||  ||||||||||||| ||| |   ||| |  || ||||||||||||||||    
T  19632544 ctacttggaataaactttctagttcccaagctagaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgtt 19632445  T
Q  418 gtgggcttttgcaa 431  Q
    ||||||||||||||    
T  19632444 gtgggcttttgcaa 19632431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 497
Target Start/End: Complemental strand, 14818487 - 14818308
Alignment:
Q  318 ctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgtt 417  Q
    |||| |||||| ||||||| ||||| ||| || |||||||||||||| ||  |||||||||||||  || ||||||| ||  | ||||| ||||||||||    
T  14818487 ctacatggaattaactttgcagttctcaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgtt 14818388  T
Q  418 gtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaacttcaca 497  Q
     ||||||||||| | || || |||||  |||| | | ||||||| || |||| |||||| || | |||||||||| ||||    
T  14818387 ctgggcttttgcgattattacttgaaaattgtaataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcaca 14818308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 16691581 - 16691639
Alignment:
Q  115 ttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcg 173  Q
    ||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  16691581 ttttttgtcaccgatctcgagcaagcgatggaaattcttactgatgatcttatgcttcg 16691639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 10579723 - 10579840
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||| |||| |||| ||  ||||| ||||| |  |||||||||||||||||||  ||||||| ||||| ||| ||||||||||    |||||||||    
T  10579723 agtgaagcgacttagaataaagattgtaattccccagctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaag 10579822  T
Q  411 aattgttgtgggcttttg 428  Q
    ||||||||| ||||||||    
T  10579823 aattgttgtcggcttttg 10579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 16569443 - 16569390
Alignment:
Q  460 caaaggagggagtgaaatatttggtagaaaacttcacaaaactcaaagagcatg 513  Q
    ||||||||||||||||| || ||||| ||||| |||||||||||||||||||||    
T  16569443 caaaggagggagtgaaacatgtggtaaaaaacctcacaaaactcaaagagcatg 16569390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 286 - 502
Target Start/End: Complemental strand, 6426648 - 6426432
Alignment:
Q  286 atttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacga 385  Q
    ||||||||||| | ||||||  | | ||||| |||| |||||| ||||||| ||||||| |  ||||||||||||| |||||  | ||||   |||| ||    
T  6426648 atttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcaaacacaagcattgatga 6426549  T
Q  386 tcaaacactctacgttatctcaaagaattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggta 485  Q
    | ||||  | || |  |||||||||||||||||| || |||||||| || || |||||  |||| || ||||||||| | |||| |||||| |  |||||    
T  6426548 tgaaactttttatgcgatctcaaagaattgttgtcggattttgcaattattacttgaaaattgtaaaggtgtcacaatgaagggtgtgaaacaagtggta 6426449  T
Q  486 gaaaacttcacaaaact 502  Q
    ||||||| |||| ||||    
T  6426448 gaaaactgcacacaact 6426432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 544
Target Start/End: Complemental strand, 16566797 - 16566761
Alignment:
Q  508 agcatggatatcttctttactagtattctgaaaatgt 544  Q
    |||||||||||||||||||||||||||||||||||||    
T  16566797 agcatggatatcttctttactagtattctgaaaatgt 16566761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 11936281 - 11936382
Alignment:
Q  330 aactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgc 429  Q
    ||||||| |||||||||  ||||||||||| |||||||   |||||  ||||||||| || |||||||    |||||||||| |||| ||||||||||||    
T  11936281 aactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgc 11936380  T
Q  430 aa 431  Q
    ||    
T  11936381 aa 11936382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 11948261 - 11948362
Alignment:
Q  330 aactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgc 429  Q
    ||||||| |||||||||  ||||||||||| |||||||   |||||  ||||||||| || |||||||    |||||||||| |||| ||||||||||||    
T  11948261 aactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgc 11948360  T
Q  430 aa 431  Q
    ||    
T  11948361 aa 11948362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 8913971 - 8914012
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttgga 352  Q
    |||||||||||||| ||| ||||||||||||||||| |||||    
T  8913971 agtgaagctacttgcaataaactttgtagttcccaagttgga 8914012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 9411448 - 9411347
Alignment:
Q  330 aactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgc 429  Q
    |||||||  ||||||||  |||||||||||||||||||  |||||   |||  |||| ||| |||||| |  ||||||||||||||| |||| |||||||    
T  9411448 aactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 9411349  T
Q  430 aa 431  Q
    ||    
T  9411348 aa 9411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 275 - 616
Target Start/End: Complemental strand, 10614741 - 10614401
Alignment:
Q  275 taagattagatatttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcataca 374  Q
    |||||||||  ||||||||||| |||  |||||| ||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||  ||||     
T  10614741 taagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatacg 10614642  T
Q  375 aaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtga 474  Q
    |||||| | ||| |||||||||| || ||||| ||||| ||| |||||||||||||| || || ||||||||| | | | ||||||| | || |||||||    
T  10614641 aaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattacttgaactttctcataatgtcacagaagaaggagtga 10614542  T
Q  475 aatatttggtagaaaacttcacaaaactcaaagagcatggatatcttctttactagtattctgaaaatgtgaactctgtaagttgtttaattttcaaata 574  Q
    || || |||||||||||| ||   || | | ||||||||| ||||||||||||||||||||||||| | |||||||||||||||   ||||||||  |||    
T  10614541 aacatgtggtagaaaactgcatgcaattgagagagcatgggtatcttctttactagtattctgaaagtttgaactctgtaagtttcataattttctcata 10614442  T
Q  575 aattannnnnnnnaaatgtcaacttacaaatgtgcatatact 616  Q
    |||||        |||||||||||||||||||||||| ||||    
T  10614441 aatta-cttttttaaatgtcaacttacaaatgtgcatttact 10614401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 48298742 - 48298955
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||  |||||| || || ||||| || ||||| ||||||| ||||||| || |||| ||||||||| | ||| |||||||||||||| ||    
T  48298742 aagagatgcaataatgtcaaaggccttctggaaatcgccattaataagaacccttgtggcagccataacatgatccctgacagtttcaggaggaccggtg 48298841  T
Q  111 aatgttt-tttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttcca 209  Q
    ||||||| ||| ||||||| ||| || |||||  ||||||| ||||||||||||||| |||| |||||||||||| ||||||| || || ||||||||||    
T  48298842 aatgtttgtttctcactgacctcaagcaagcggcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgttgggaacttcca 48298941  T
Q  210 gtagcatagtagat 223  Q
    | ||||||| ||||    
T  48298942 gcagcatagcagat 48298955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 312 - 497
Target Start/End: Original strand, 15092139 - 15092324
Alignment:
Q  312 gtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaaga 411  Q
    ||||| |||| |||||| ||||||| ||||||| |  ||||||||||||| |||||  | ||||||||| | ||| |||||||||| |  ||||||||||    
T  15092139 gtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaaga 15092238  T
Q  412 attgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaacttcaca 497  Q
    |||||||||||||||||||| || || ||||| ||||| | | ||||||| | | |||||||||| || || ||||||||| ||||    
T  15092239 attgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcaca 15092324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 21629326 - 21629113
Alignment:
Q  13 agagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacattt-caggaggaccgttga 111  Q
    ||||||||||||| |||||| || ||| ||||||||||||| |||||||| ||||||||| |||| ||||||||| |||||||| |||||||||||||||    
T  21629326 agagatgcaatattgtcaaaggccttgaggaagtctccattaataagaagtcttgtgacagccataacatgatccctaacattttcaggaggaccgttga 21629227  T
Q  112 atgtt-ttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccag 210  Q
    ||||| |||||||||| |||||||| |||||| ||||||| ||||||||||||||| ||||||  ||||||| | ||||||| ||||| ||||||||||     
T  21629226 atgttcttttgtcacttatctcgagcaagcgatggaaattcttactgatgatcttacgcttcgtgtcatgaatattggctgccatattgggaacttccaa 21629127  T
Q  211 tagcatagtagata 224  Q
    || ||||| |||||    
T  21629126 taccatagcagata 21629113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 233626 - 233839
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||  |||||| || || ||||| |||||||| ||||||| ||||||| || |||| ||||||||| | ||| |||||||||||||| ||    
T  233626 aagagatgcaataatgtcaaaggccttctggaaatctccattaataagaacccttgtggcagccataacatgatccctgacagtttcaggaggaccggtg 233725  T
Q  111 aatgttt-tttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttcca 209  Q
    ||||||| ||| ||||||| ||| || |||||  ||||||| ||||||||||||||| |||| |||||||||||| ||||||| || || ||||||||||    
T  233726 aatgtttgtttctcactgacctcaagcaagcggcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgtttggaacttcca 233825  T
Q  210 gtagcatagtagat 223  Q
    | ||||||| ||||    
T  233826 gcagcatagcagat 233839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 427
Target Start/End: Original strand, 1037651 - 1037767
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||| |||||| |||| ||||||  ||||||  | || |||||||| |||||||| ||||||   ||||| ||| ||||||||||  | |||||||||    
T  1037651 agtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaag 1037750  T
Q  411 aattgttgtgggctttt 427  Q
    |||||||||||||||||    
T  1037751 aattgttgtgggctttt 1037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 45245084 - 45245192
Alignment:
Q  323 tggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtggg 422  Q
    |||||| ||||||| |||||| ||  | ||||||||||| |||||  | |||| |||||| ||| |||||||| | || |||||||||| |||| |||||    
T  45245084 tggaataaactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T
Q  423 cttttgcaa 431  Q
    |||||||||    
T  45245184 cttttgcaa 45245192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 8e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 7391869 - 7391656
Alignment:
Q  12 aagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaaca-tttcaggaggaccgttg 110  Q
    |||||||||||||  |||||| || || ||||| |||||||| ||||||| ||||||| || |||| ||||||||| | ||| |||||||||||||| ||    
T  7391869 aagagatgcaataatgtcaaaggccttctggaaatctccattaataagaacccttgtggcagccataacatgatccctgacagtttcaggaggaccggtg 7391770  T
Q  111 aatgttt-tttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttcca 209  Q
    ||||||| ||| || |||| ||| || |||||  ||||||| ||||||||||||||| |||| |||||||||||| ||||||| || || ||||||||||    
T  7391769 aatgtttgtttctcgctgacctcaagcaagcgtcggaaattcttactgatgatcttacgctttgcatcatgaacattggctgccatgttgggaacttcca 7391670  T
Q  210 gtagcatagtagat 223  Q
    | ||||||| ||||    
T  7391669 gcagcatagcagat 7391656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 19468486 - 19468603
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||| ||||||||| | |||||||||||||||||  ||||||||||||| |||||  ||||||||||||| ||| ||||||| || || |||||||||    
T  19468486 agtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaag 19468585  T
Q  411 aattgttgtgggcttttg 428  Q
    || |||||||| ||||||    
T  19468586 aactgttgtggacttttg 19468603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 792 - 881
Target Start/End: Original strand, 19468981 - 19469069
Alignment:
Q  792 tataaggcagacttttggccttccgccatcaacatcatttggggtgttatatgccgttttaaactgttttctttttcttcgcttttcctt 881  Q
    |||| ||| ||||||| || ||| |||||||||| || ||||| |||||||||| |||||||| |||||| ||||||||| |||| ||||    
T  19468981 tatatggcggacttttagctttctgccatcaacaacacttggg-tgttatatgcagttttaaattgttttgtttttcttctctttgcctt 19469069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 43634979 - 43634902
Alignment:
Q  351 gaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttg 428  Q
    |||| ||||||||||||  |||||||||||||||||  |||||| || || | ||||||||||||| |||| ||||||    
T  43634979 gaggcgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttg 43634902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 52082691 - 52082582
Alignment:
Q  313 tgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaa 412  Q
    |||| ||||||  ||| ||||||  |||| |||| ||||||||||||||||||||  | |||||  |||| ||| ||||| | || || ||||||||||     
T  52082691 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 52082592  T
Q  413 ttgttgtggg 422  Q
    ||||||||||    
T  52082591 ttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 18315262 - 18315380
Alignment:
Q  313 tgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaa 412  Q
    ||||||||| |||||| ||||||  |||||||||  ||||||||||||||||||| |||||||| ||||| ||| || ||||||| || ||||||||||     
T  18315262 tgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagag 18315361  T
Q  413 ttgttgtgggcttttgcaa 431  Q
    |||| || |||||||||||    
T  18315362 ttgtcgtaggcttttgcaa 18315380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 27922601 - 27922503
Alignment:
Q  330 aactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttg 428  Q
    ||||||| ||||||||| ||||||||||||||||||||  ||||||| ||||| ||| || |||| ||  | |||||||||| ||||||||||||||||    
T  27922601 aactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttg 27922503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 32151412 - 32151293
Alignment:
Q  312 gtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaaga 411  Q
    |||||||| | |||||| ||||| | |||| ||||| |||||||||| ||||||||   ||||| | |||| ||| |||||||||| || ||||||||||    
T  32151412 gtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaaga 32151313  T
Q  412 attgttgtgggcttttgcaa 431  Q
     |||| ||||||||||||||    
T  32151312 gttgtagtgggcttttgcaa 32151293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 475
Target Start/End: Original strand, 17628038 - 17628165
Alignment:
Q  348 ttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgcaaataatagttgaacttt 447  Q
    |||||||||||||||||||| ||||| |  ||||| ||| || |||||   || |||||||||||||||| |||||| ||| || || || | ||| |||    
T  17628038 ttggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggctcttgaaactattactagaatttt 17628137  T
Q  448 gtgaaagtgtcacaaaggagggagtgaa 475  Q
    || || |||||||| |  ||||||||||    
T  17628138 gtaaaggtgtcacagacaagggagtgaa 17628165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 17636402 - 17636493
Alignment:
Q  325 gaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgt 416  Q
    |||| ||||||| ||||||||| |||||||||||||||||||| || |||   ||||||||| || || | || || |||||||||| ||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 314 - 562
Target Start/End: Original strand, 20478072 - 20478315
Alignment:
Q  314 gaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaat 413  Q
    ||||||||||||||| ||| ||||| ||||| |  |||||||||||||||||||  ||||||| ||||| ||  ||||| | |  || ||||||| ||||    
T  20478072 gaagctacttggaataaacgttgtaattccccagctggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaat 20478171  T
Q  414 tgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaacttcacaaaactcaaagagcatg 513  Q
    ||||||||||||||||||||| || |  ||  ||| || | |||||||| | | |||| |||| || | |||||||||| |||| |||| | ||||||||    
T  20478172 tgttgtgggcttttgcaaatactactgaaaaattgcgataatgtcacaatgaaaggagcgaaacatgtcgtagaaaactgcacacaactgagagagcatg 20478271  T
Q  514 gatatcttctttactagtattctgaaaatgtgaactctgtaagttgttt 562  Q
    |||  |||      ||| ||||||||||| ||||||||| |||||||||    
T  20478272 gatgcctt-----atagaattctgaaaatttgaactctgcaagttgttt 20478315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 279 - 426
Target Start/End: Original strand, 41889509 - 41889656
Alignment:
Q  279 attagatatttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaagg 378  Q
    |||||||||||||||||||||   |||  |  |||||||||||||| ||| ||||||  ||||||||| ||||||||||||||||| ||  ||||||| |    
T  41889509 attagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaag 41889608  T
Q  379 ttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttt 426  Q
    |||| ||| ||||||| ||    |||||||||| |||||| |||||||    
T  41889609 ttgatgatgaaacactttataagatctcaaagagttgttgcgggcttt 41889656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 37937990 - 37937879
Alignment:
Q  320 acttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgt 419  Q
    ||||| |||| |||||| |||||||||  | ||||||||| ||||| | |||||||   |||| |||||||||||||| || ||||||||||  ||| ||    
T  37937990 acttgaaatcgactttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgt 37937891  T
Q  420 gggcttttgcaa 431  Q
    ||||||||||||    
T  37937890 gggcttttgcaa 37937879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 32267568 - 32267470
Alignment:
Q  330 aactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttg 428  Q
    ||||||| ||||||||| |||||||| ||||||||||| || ||||  ||||| ||| || |||| ||  | |||||||||| ||||||||||||||||    
T  32267568 aactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttg 32267470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 331 - 428
Target Start/End: Original strand, 41901542 - 41901639
Alignment:
Q  331 actttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttg 428  Q
    |||||| |||||||||  |||||||||||||||||||  ||||||| ||||| ||| || |||| ||  | |||||||||| ||||||||| ||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttg 41901639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 38267558 - 38267660
Alignment:
Q  326 aatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggctt 425  Q
    ||||||||||| |||||||||  | ||||||||| ||||| | |||||||  ||||| ||| | |||||||| || ||||||||||  ||  ||||||||    
T  38267558 aatcaactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggctt 38267657  T
Q  426 ttg 428  Q
    |||    
T  38267658 ttg 38267660  T

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Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 1548409 - 1548530
Alignment:
Q  310 aagtgaagctactt-ggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaa 408  Q
    |||||||||||||| ||| | ||||||| | |||||||  ||||||||||||||||||| |||||||   |||| ||| |||||||| | || |||||||    
T  1548409 aagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaa 1548508  T
Q  409 agaattgttgtgggcttttgca 430  Q
    ||| ||||||||||||||||||    
T  1548509 agagttgttgtgggcttttgca 1548530  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 1524485 - 1524593
Alignment:
Q  323 tggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtggg 422  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||| | |||||  ||||| ||| ||||||||||  | |||||| ||| |||| |||||    
T  1524485 tggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T
Q  423 cttttgcaa 431  Q
    |||||||||    
T  1524585 cttttgcaa 1524593  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 286 - 428
Target Start/End: Complemental strand, 547050 - 546908
Alignment:
Q  286 atttgaacttatccttctgtaaagaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacga 385  Q
    ||||||||||||||   |||  || |||||| ||| ||||||| ||||||| |||||| || ||||||||| |||||||||| | |||||  ||  | ||    
T  547050 atttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatga 546951  T
Q  386 tcaaacactctacgttatctcaaagaattgttgtgggcttttg 428  Q
    | |||||||||| || |||||||||| ||||||||||||||||    
T  546950 tgaaacactctatgtgatctcaaagagttgttgtgggcttttg 546908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 311 - 431
Target Start/End: Original strand, 53761759 - 53761877
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||||||| ||||||| |||||||||||||||||  | |||| ||||||||||||   ||| || ||| ||||| |||||||||  || ||||| |||    
T  53761759 agtgaagctaattggaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactct--gtgatctcgaag 53761856  T
Q  411 aattgttgtgggcttttgcaa 431  Q
    |||||| ||||||||||||||    
T  53761857 aattgtcgtgggcttttgcaa 53761877  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 431
Target Start/End: Original strand, 1513407 - 1513514
Alignment:
Q  324 ggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggc 423  Q
    ||||| ||||||| |||||||||  | || ||||||||||||||   |||||| ||||| ||| ||||||||||||| |||||||||  |||| ||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  424 ttttgcaa 431  Q
    ||||||||    
T  1513507 ttttgcaa 1513514  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 640990 - 640908
Alignment:
Q  348 ttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgca 430  Q
    ||||||||||||||||||||  ||||||| ||||| ||| ||||||||||||| | ||||||||||||  |||| ||||||||    
T  640990 ttggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgca 640908  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 308 - 430
Target Start/End: Original strand, 1552751 - 1552873
Alignment:
Q  308 agaagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctca 407  Q
    ||||| ||||||||||||| | ||||||| | |||||||  |||| |||||||| ||||| ||||||||  || | ||| |||||||| | || || |||    
T  1552751 agaagggaagctacttggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatca 1552850  T
Q  408 aagaattgttgtgggcttttgca 430  Q
    ||||||||| |||||||||||||    
T  1552851 aagaattgtcgtgggcttttgca 1552873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 427
Target Start/End: Original strand, 55908715 - 55908831
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||| |||||| |||| ||||||  ||||||  | || |||||||| |||||||| ||||||   ||||| ||| ||||||||||  | |||||||||    
T  55908715 agtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaag 55908814  T
Q  411 aattgttgtgggctttt 427  Q
    |||||||||||||||||    
T  55908815 aattgttgtgggctttt 55908831  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 55505135 - 55505214
Alignment:
Q  351 gaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgca 430  Q
    |||||||||||||||||  |||||||||||||||||  |||||| || || | ||||||||||||| |||| ||||||||    
T  55505135 gaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgca 55505214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 8187091 - 8187197
Alignment:
Q  324 ggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggc 423  Q
    ||||| ||||||| | || ||||  ||||||||||||||||||| |||||||  ||||| ||| ||||||| || |  || ||||||| |||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  424 ttttgca 430  Q
    |||||||    
T  8187191 ttttgca 8187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 12121458 - 12121564
Alignment:
Q  325 gaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggct 424  Q
    |||| ||||||| |||||||||  | || ||||||||||||||  ||||||| ||||| ||| ||||||||| ||| |||||||||  |||  |||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  425 tttgcaa 431  Q
    |||||||    
T  12121558 tttgcaa 12121564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 8184031 - 8184134
Alignment:
Q  325 gaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggct 424  Q
    |||| ||||||| |||||| ||  | ||||||||||||||||| |||||||  ||||| |||  | ||||||| |  |||||||||| ||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  425 tttg 428  Q
    ||||    
T  8184131 tttg 8184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 21834364 - 21834421
Alignment:
Q  310 aagtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtc 367  Q
    |||||||||||| | | ||||||||||||||||||||  ||||||||||| |||||||    
T  21834364 aagtgaagctacatagtatcaactttgtagttcccaagctggaggtgttggacttgtc 21834421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  325 gaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaa 409  Q
    |||| ||||||| |||||||||  | ||||||||||||||||| ||||||| |||||| ||  || ||||||| || ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 314 - 490
Target Start/End: Original strand, 1537757 - 1537933
Alignment:
Q  314 gaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaat 413  Q
    |||||| | |||||| ||||||| |||||||||  | || ||||||||||||||  ||||||| ||| | ||  ||||||| |  || |||||||||  |    
T  1537757 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 1537856  T
Q  414 tgttgtgggcttttgcaaataatagttgaactttgtgaaagtgtcacaaaggagggagtgaaatatttggtagaaaa 490  Q
    ||| |||||||||||||| |  || | ||||||||| |   ||||||| || |||||||||| ||| || |||||||    
T  1537857 tgtcgtgggcttttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaa 1537933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 426
Target Start/End: Complemental strand, 532301 - 532186
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||| ||||||||||| ||||||| ||| |||||  | |||||||||||||||||  |||||||  |||| ||| |||  || || || | |||||||    
T  532301 agtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaag 532202  T
Q  411 aattgttgtgggcttt 426  Q
    |||||| ||| |||||    
T  532201 aattgtcgtgagcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 3438590 - 3438672
Alignment:
Q  348 ttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgcaa 431  Q
    |||||||| |||| |||||| |||||||  ||||| ||| ||| |||| | || |||||||||| |||||||||||||||||||    
T  3438590 ttggaggtattgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaa 3438672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 1508033 - 1508110
Alignment:
Q  354 gtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgcaa 431  Q
    |||||||||||||| ||||| || ||||| ||| ||||||| |  || |||||||||  |||| ||||||||||||||    
T  1508033 gtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaa 1508110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 1600518 - 1600445
Alignment:
Q  324 ggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactcta 397  Q
    ||||| ||||||| |||||  ||  |||||||||||||||||||  |||||| |||||||||| || |||||||    
T  1600518 ggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactcta 1600445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 424
Target Start/End: Original strand, 611 - 724
Alignment:
Q  311 agtgaagctacttggaatcaactttgtagttcccaatttggaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaag 410  Q
    |||||| |||||| |||| ||||||  ||||||  | || |||||||| |||||||| |||||||  || || ||| ||||||||||  | ||||| |||    
T  611 agtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaag 710  T
Q  411 aattgttgtgggct 424  Q
    ||||||||||||||    
T  711 aattgttgtgggct 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 39256 - 39177
Alignment:
Q  351 gaggtgttgaacttgtctcatacaaaggttgacgatcaaacactctacgttatctcaaagaattgttgtgggcttttgca 430  Q
    ||||||||||||||| |   |||||||||| | ||| ||||||| || || |||||||||| |||| |||||||||||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgca 39177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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