View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544R-Insertion-2 (Length: 953)
Name: NF4544R-Insertion-2
Description: NF4544R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 9 - 800
Target Start/End: Original strand, 53674333 - 53675128
Alignment:
| Q |
9 |
attttctcttaatcttaggaccagatgaaggtgtatatgtcatgcttgatgctctagtgctaaatgtgtcatcttctgtgctgttggattgtccctctag |
108 |
Q |
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| T |
53674333 |
attttctcttaatcttaggaccagatgaaggtgtatatgtcaagcttgatgctctagtgctaaatgtgtcatcttctgtgctgttggattgtccctctag |
53674432 |
T |
|
| Q |
109 |
tagtccatctagaagtactgttctaggtgaactgttctgttgattcatttctgagataaaaaa----gaaaatagcaaggtacattatttttcagtaatt |
204 |
Q |
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| T |
53674433 |
tagtccatctagaagtactgttctaggtgaactgttctgttgattcatttctgagataaaaaaaaaggaaaatatcaaggtacattatttttcagtaatt |
53674532 |
T |
|
| Q |
205 |
tgatttgtattttgttaattaacattactttagaaaaattgaattaccttgaaaatctgttgaattgatattctgttctgtttttgtgctccttccaact |
304 |
Q |
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| T |
53674533 |
tgatttgtattttgttaattaacattactttagaaaaactgaattaccttgaaaatctgttgaattgatattctgttctgtttttgtgttccttccaact |
53674632 |
T |
|
| Q |
305 |
gagacaattgtgcagccttcatgcacatgctcaaagcaatacttggtaattcctttagaggtgccaattctataaaaaatgataaagggggttgtcaaat |
404 |
Q |
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| T |
53674633 |
gagacaattgtgcagccttcatgcacatgctcaaagcaataattggtaattcctttagaggtgccaattctataaacaatgataaagggggttgtcaaat |
53674732 |
T |
|
| Q |
405 |
gcttagatctttataaatgatttgaataaatgttacactgatgagttcttacttattcgttttgtttcttgttccgccaagaagaagaagaaaatcagca |
504 |
Q |
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| T |
53674733 |
gcttagatctttataaatgatttgaataaatgttacactgatgagttcttacttaattgttttgtttcttgttccgccaagaagaagaagaaaatcagca |
53674832 |
T |
|
| Q |
505 |
gaaattgacttggcttcctccactaaaccaccacctactgtggaactcaatgccacttttgcctccaaattaacctgataatgatgttttcatcagcatt |
604 |
Q |
| |
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| T |
53674833 |
gaaattgacttggcttcctccactaaaccaccacctactgtggaactcaatgccacttttgcctccaaattaacctgataatgatgttttcatcagcatt |
53674932 |
T |
|
| Q |
605 |
cttcgactctaatagcaaaccatattaaagtctaaccattatatgacagacagggtcaactatatttttgattccctctaaaatactcttcatcttagta |
704 |
Q |
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| T |
53674933 |
cttcgactctaatagcaaaccatattaaagtctaaccattatatgacagacagggtcaactatattttttattccctctaaaatactcttcatcttagta |
53675032 |
T |
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| Q |
705 |
cttactaaaatttggtcccctccatgtctctagaatccatccctattcaatgtcgttttttgcggactaatcagaaggaatgcaaatcacgtaaac |
800 |
Q |
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| T |
53675033 |
cttactaaaatttggtccactccatgtctctagaatccatccctatcgaatgtcgttttttgcagactaatcagaaggaatgcaaatcacgtaaac |
53675128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 801 - 953
Target Start/End: Original strand, 53675181 - 53675332
Alignment:
| Q |
801 |
atgtgttgcattccccctatccaataacaaa-cattattttttcctcaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
899 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675181 |
atgtgttgcattccccctatccaataacaaaacattattttttccccaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
53675280 |
T |
|
| Q |
900 |
gtttgaaattaattacctgtttggaccaacaacaagtctgtgc-aattctccaag |
953 |
Q |
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| T |
53675281 |
gtttgaaattaattacctgtttggac---caacaagtctgtgcaaattctccaag |
53675332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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