View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544R-Insertion-3 (Length: 711)
Name: NF4544R-Insertion-3
Description: NF4544R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544R-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 9 - 550
Target Start/End: Complemental strand, 50568361 - 50567813
Alignment:
| Q |
9 |
tgtttaacataaaacagcggtgggttcaaattccactatgttaaattgctatagtgtcggtatagcctctattcaaggacattttgtactaaaaagtgta |
108 |
Q |
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| T |
50568361 |
tgtttaacataaaacagcggtgggttcaaattccactatgttaaattgctatagtgtcggtatagcctctattcaaggacattttgtactaaaaagtgta |
50568262 |
T |
|
| Q |
109 |
ttaccaatcaaaagtgataagttctaaaaagtgtattgcggattaaaagtgatttgttcaaattctgctatgctatctaactactgcaaccgctgtttga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50568261 |
ttaccaatcaaaagtgataagttctaaaaagtgtattgcggattaaaagtgatttgttcaaattctgctatgctatctaactactgcaaccgctgtttga |
50568162 |
T |
|
| Q |
209 |
catcattgtttaacacgaatacacttttttgttggcatgagcaaaccacataatttgagggtttagaccatcttcaaatgcatgtctttcaatgcatata |
308 |
Q |
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| T |
50568161 |
catcattgtttaacacgaatacactttttttttggcatgagcaagccacataatttgagggtttagaccatcttcaaatgcatgtctttcaatgcatata |
50568062 |
T |
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| Q |
309 |
tttgatgattataagtatttttgtcaannnnnnngcttttgattctaatttcagtttcttagcaactaaatttgaattagttataaaataactaacattt |
408 |
Q |
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| T |
50568061 |
tttgatgattataagtatttttgtcaatttttttgcttttgataataatttcagtttcttagcaactaaatttgaattagttataaaataactaacattt |
50567962 |
T |
|
| Q |
409 |
gaatgattttccacttcaa-------agctaaaaaacaaatattttgaaaaattattaacataaacccagaaacccccaagaacagattaaaattaattt |
501 |
Q |
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| T |
50567961 |
gaatgattttccacttcaaaatcttcagctaaaaaacaaatattttgaaaaattattaacataaacccagaaacctccaagaacagattaaaattaattt |
50567862 |
T |
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| Q |
502 |
tttattcccattccttaaaattatggcatccaattccaaaaagttacgt |
550 |
Q |
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| T |
50567861 |
tttattcctattccttaaaattatggcatccaattccaaaaagttacgt |
50567813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 50568567 - 50568383
Alignment:
| Q |
9 |
tgtttaacataaaacagcggtgggttcaaattccactatgttaaattgctatagtgtcggtatagcctctattcaaggacattttgtactaaaaagtgta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
50568567 |
tgtttaacataaaacagcggtgggttcaaattccactatgttaaatcgctacagtgtcggtatagcctctattcaagtacattctgtactaaaaagtgta |
50568468 |
T |
|
| Q |
109 |
ttaccaatcaaaagtgataagttctaaaaagtgtattgcggattaaaagtgatttgttcaaattctgctatgctatctaactact |
193 |
Q |
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| T |
50568467 |
ttactgatcaaaagtgatttgttctaaaaaatgtattgcagattaaaagtgatttgttcaaattctgctacgctatctaactact |
50568383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 50568780 - 50568559
Alignment:
| Q |
9 |
tgtttaacataaaacagcggtgggttcaaattccactatgttaaattgctatagtgtcggtatagcctctattc-------aaggacattttgtactaaa |
101 |
Q |
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| T |
50568780 |
tgtttaacataaaactgcggtgggttcaaattccactttgttaaattgctatagtgtccgtatagcctctattctctattcaagtacattttgtactaaa |
50568681 |
T |
|
| Q |
102 |
aagtgtattaccaatcaaaagtgataagttctaaaaagtgtattgcggattaaaagtgatttgttcaaattctgctatgctatctaactactgcaaccgc |
201 |
Q |
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| T |
50568680 |
aagtgtattacggatcaaaagtgatttgttctaaaaagtgtattgtggattaaaggtgatttgttcaaattctgctacgctatctaactactataaccgc |
50568581 |
T |
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| Q |
202 |
tgtttgacatcattgtttaaca |
223 |
Q |
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||||| || |||||||||| |
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| T |
50568580 |
cacttgacgtccttgtttaaca |
50568559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 619 - 711
Target Start/End: Complemental strand, 50567742 - 50567650
Alignment:
| Q |
619 |
ttgaattgaagtaaaatctttgagaatcttgagatacctgtgttcttcttcagtccatggagttcctttcttcctctcgttatcaccgccatg |
711 |
Q |
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| T |
50567742 |
ttgaattgaagtaaaatctttgagaatcttgagatacctgtgttcttcttcagtccatggagttcctttcttcctctcgttatcaccgccatg |
50567650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 50568948 - 50568880
Alignment:
| Q |
13 |
taacataaaacagcggtgggttcaaattccactatgttaaattgctatagtgtcggtatagcctctatt |
81 |
Q |
| |
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|||||||||| || |||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||| |
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| T |
50568948 |
taacataaaatagtggtgggtttaaattccgctatgttacattgctatagtgtcgatatagcctctatt |
50568880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 50568840 - 50568772
Alignment:
| Q |
155 |
aagtgatttgttcaaattctgctatgctatctaactactgcaaccgctgtttgacatcattgtttaaca |
223 |
Q |
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| T |
50568840 |
aagtgatttgttcaaattttgctacgctatctaactactataaccgctacttgacgtccttgtttaaca |
50568772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 11570697 - 11570743
Alignment:
| Q |
138 |
agtgtattgcggattaaaagtgatttgttcaaattctgctatgctat |
184 |
Q |
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| T |
11570697 |
agtgtattgcggaacaataatgatttgttcaaattctgctatgctat |
11570743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 35123168 - 35123127
Alignment:
| Q |
138 |
agtgtattgcggattaaaagtgatttgttcaaattctgctat |
179 |
Q |
| |
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|||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
35123168 |
agtgtattacggaataatagtgatttgttcaaattctgctat |
35123127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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