View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544R-Insertion-4 (Length: 579)
Name: NF4544R-Insertion-4
Description: NF4544R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544R-Insertion-4 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 66 - 407
Target Start/End: Complemental strand, 2183134 - 2182794
Alignment:
| Q |
66 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
165 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2183134 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
2183035 |
T |
|
| Q |
166 |
aattgaannnnnnnaagaaaaagagaaatgtcgtagcattgagggagatgtgaaaacaaccttcgttttctttagtttctagcttccacgcaatttcaaa |
265 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2183034 |
aattgaatttttttaagaaaaagagaaatgtcgtagcattgagggagatgtgaaaacaaccttcgttttctttagtttctagctttcacacaatttcaaa |
2182935 |
T |
|
| Q |
266 |
caccactagactgaaatggcccacatccaaacatcttattaaagacaaaataattgtatcaatgataatgtgttatttaaacgatcacatgtataataac |
365 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| | |
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| T |
2182934 |
caccactagactaaaatggcccacatccaaacatcttattaaagacaaaataattgtatcaatgataatgtgttatttgaacaatc-tatgtataatttc |
2182836 |
T |
|
| Q |
366 |
ttatgaaacaactataaatttacgtagaaaagtagatattga |
407 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2182835 |
ttatgaaacaactataaatttacgtaaaaaagtagatattga |
2182794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 66 - 411
Target Start/End: Original strand, 2158928 - 2159274
Alignment:
| Q |
66 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttggg-ttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaa |
164 |
Q |
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||||||||||||| |||| | || |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
2158928 |
aagttggttgcaagtcgacactattgtgtccgaaggagtctttggggttggactaagtcttgcatactcctaaaatgaatacttaaaacaatattttcaa |
2159027 |
T |
|
| Q |
165 |
taattgaannnnnnnaagaaaaagagaaatgtcgtagcattgagggagatgtgaaaacaaccttcgttttctttagtttctagcttccacgcaatttcaa |
264 |
Q |
| |
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|||| || |||||||| |||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
2159028 |
taatgaaatttttttaagaaaaa-agaaatgttgtagcattgagggaggtgtgaaaccaaccttccttttctttagtttctggtttccacgcaatttcaa |
2159126 |
T |
|
| Q |
265 |
acaccactagactgaaatggcccacatccaaacatcttattaaagacaaaataattgtatcaat-gataatgtgttatttaaacgatcacatgtataata |
363 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| ||| |
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| T |
2159127 |
acaccactagactaaaatggcccacatttaaacatcttattaaagacaaaataattgtatatatatctaatgtgttatttaaacaatcatgtgtatgata |
2159226 |
T |
|
| Q |
364 |
acttatgaaacaactataaatttacgtagaaaagtagatattgacaac |
411 |
Q |
| |
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||||||| |||||| |||||||||| |||||| |||||||||||||| |
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| T |
2159227 |
acttatggaacaaccataaatttacaaagaaaaatagatattgacaac |
2159274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 2184139 - 2184089
Alignment:
| Q |
9 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2184139 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
2184089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 2182690 - 2182637
Alignment:
| Q |
526 |
tctttcattttaatattatttatttctatgttcaagattgtctcaaaccattca |
579 |
Q |
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| T |
2182690 |
tctttcattttaatattatttatttctatgtccaagattgtctcaaaccattca |
2182637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 1191 - 1297
Alignment:
| Q |
66 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1191 |
aagttggttgcaactcgaaattactgtgtctgaaggagtctttgggttggactcagtcttggtcactcctaaaatgaatactttaaacaatactttcaat |
1290 |
T |
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| Q |
166 |
aattgaa |
172 |
Q |
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||||||| |
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| T |
1291 |
aattgaa |
1297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 187 - 237
Alignment:
| Q |
9 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
187 |
gattgtggcatagccatgagaatagaggtatgagaaatgagatatgagaat |
237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 42075281 - 42075327
Alignment:
| Q |
363 |
aacttatgaaacaactataaatttacgtagaaaagtagatattgaca |
409 |
Q |
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||||| || ||||||||||||||||| ||||||||||| |||||||| |
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| T |
42075281 |
aacttttggaacaactataaatttacatagaaaagtaggtattgaca |
42075327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 1863145 - 1863101
Alignment:
| Q |
361 |
ataacttatgaaacaactataaatttacgtagaaaagtagatatt |
405 |
Q |
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| T |
1863145 |
ataacttatgaaacaaccataaatttataaagaaaagtagatatt |
1863101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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