View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544R-Insertion-6 (Length: 430)
Name: NF4544R-Insertion-6
Description: NF4544R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544R-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 40119172 - 40118753
Alignment:
| Q |
9 |
catttcggttcacgtaacttaactttcttaattcgtatggatattagtcagctaaaaaatacacaagatcaatagttagttttaatctttcctttctccg |
108 |
Q |
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| T |
40119172 |
catttcggttcacgtaacttaactttcttaattcatatg-atattagtcagctaagaaatacacaagatcaatagttagttttaatatttcctttctccg |
40119074 |
T |
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| Q |
109 |
agcttaaatataaataaaagtttgttaannnnnnnnnnatgaaatcaatctatattacatactttttaggcattatattacgtatctttatcattgatgt |
208 |
Q |
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| T |
40119073 |
atcttaaatataaataaaaatttgcta-ttttttttttatgaaatcaatttatattacatactttttaggcattatattacgtatctttatcattgatgt |
40118975 |
T |
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| Q |
209 |
cattcatgagattgaatgaccaaaattaataaaagcatctccaacgctagcattgaaattttgttcttgcttatatttttgtgggtccaaacgtgacaag |
308 |
Q |
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| T |
40118974 |
cattcatgagatcgaatgaccaaaattaataaaagcatctccaacgcttgcattgaaattttgttcttgcttatatttttgtgggtccaaacgtgacaag |
40118875 |
T |
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| Q |
309 |
taggatttccaaaatcaatccattttctttcaaaaggaaaattttcattcatgttctttttctatttaagtggacactattatttcacatgtggtttcac |
408 |
Q |
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| T |
40118874 |
taggatttccaaaatcaatccattttctttcaaaaggaaaattttcattcatgttcttgttctatttaagtggacactattatttcacatgtggtttcac |
40118775 |
T |
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| Q |
409 |
ttcgtcccctacatctatcttc |
430 |
Q |
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| T |
40118774 |
ttcttcccctacatctatcttc |
40118753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 381
Target Start/End: Original strand, 43974498 - 43974635
Alignment:
| Q |
242 |
agcatctccaacgctagcattgaaattttgttcttgcttatatttttgtgggtccaaacgtgacaagtaggatttc-caaaatcaatcca-ttttctttc |
339 |
Q |
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|||||||||||| ||||||||| ||||||||||||| ||| ||||||||| |||||||||||| | |||||||||| |||||||||||| ||||| || |
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| T |
43974498 |
agcatctccaacactagcattgtaattttgttcttggttacatttttgtgagtccaaacgtgagaggtaggatttcaaaaaatcaatccatttttcactc |
43974597 |
T |
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| Q |
340 |
aaaaggaaaattttcattcatgttctttttctatttaagtgg |
381 |
Q |
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| T |
43974598 |
caacggaaaattttcatt----ttcttgttctatttaagtgg |
43974635 |
T |
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