View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_high_18 (Length: 213)
Name: NF4544_high_18
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 33156267 - 33156355
Alignment:
| Q |
13 |
ataatacttggagtatgttaaaagtcacatattcatttgtgtggttaattttggcttaatccaatggtttaggaggtctgtagacatat |
101 |
Q |
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| T |
33156267 |
ataatacttggagtatgttaaaagtcacatattcatttgtgtggttaattttggcttaatccaatggtttaggaggtttgtagacatat |
33156355 |
T |
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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 33156426 - 33156521
Alignment:
| Q |
103 |
cttttgtttattaatcttaaatggactcctcaatttcttttaaaaaatgataaaaatctcaacttgtattttggattgactccttgattacatact |
198 |
Q |
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| T |
33156426 |
cttttgtttattcatcttaaatggagtcctcaatttcttttaaaaaatgataaaaatctcagcttgtattttgagttgactccttgattacatact |
33156521 |
T |
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