View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_high_8 (Length: 368)
Name: NF4544_high_8
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 11530617 - 11530461
Alignment:
| Q |
20 |
agtttatcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaa |
119 |
Q |
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| T |
11530617 |
agtttgtcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaa |
11530518 |
T |
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| Q |
120 |
tgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
176 |
Q |
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| T |
11530517 |
tgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11530461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 11556114 - 11555958
Alignment:
| Q |
20 |
agtttatcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaa |
119 |
Q |
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| T |
11556114 |
agtttgtcgtgttttattgctgtctcgattaaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaa |
11556015 |
T |
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| Q |
120 |
tgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
176 |
Q |
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| T |
11556014 |
tgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11555958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 11555891 - 11555796
Alignment:
| Q |
260 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcatctc |
355 |
Q |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctc |
11555796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 11530213 - 11530150
Alignment:
| Q |
292 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcatctc |
355 |
Q |
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| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctc |
11530150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 11556559 - 11556521
Alignment:
| Q |
42 |
tctcgattaaatcctcatacaaggtgttggaatgtttgt |
80 |
Q |
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| T |
11556559 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
11556521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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