View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_low_12 (Length: 309)
Name: NF4544_low_12
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_12 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 40699465 - 40699186
Alignment:
| Q |
19 |
ggaacagaggaggaatagggaaatttgagaaagatggctactttgannnnnnnattaaataaatacttgttttttaattttaaatctaaaccttaggtag |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40699465 |
ggaacagaggaggaatagggaaatttaagaaagatggttactttgatttttt-attaaataaatacttgttttttaattttaaatctaaaccttaggtag |
40699367 |
T |
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| Q |
119 |
agtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagctagttaattgttggagttgga |
218 |
Q |
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||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40699366 |
agtgcttctccaaatggtcaatattcagctagttatgaatataggtggttagatcagaatctaactcaacaagtagagctaattaattgttggagttgga |
40699267 |
T |
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| Q |
219 |
tatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgcctttg |
299 |
Q |
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| T |
40699266 |
cctggaggcttcaagtttctgaaaatctatggcatttttgttggatgaagatgcatgatagcctccctaccaatgcctttg |
40699186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 119 - 298
Target Start/End: Complemental strand, 1260232 - 1260053
Alignment:
| Q |
119 |
agtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagctagttaattgttggagttgga |
218 |
Q |
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| T |
1260232 |
agtgcttctccaaatggtcaatactcagctagttatggatataggtggtttgatcataatctaactcaacaagtagagctagttaattgttggagttgga |
1260133 |
T |
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| Q |
219 |
tatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgccttt |
298 |
Q |
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| T |
1260132 |
tctggaggcttcaagtttctgaaaatctaagacatttttgttggctggtgatgcatgctagcctccctatcaatgccttt |
1260053 |
T |
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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 33509090 - 33509212
Alignment:
| Q |
176 |
aatctaactcaacaagtagagctagttaattgttggagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatg |
275 |
Q |
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| T |
33509090 |
aatctaactcaacaagtagagccagttaattgttggagttggatctagaggcttctggtttatgaaaatcttagacatttttgttggctggtgatgcatg |
33509189 |
T |
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| Q |
276 |
ctagcctccctaccaatgccttt |
298 |
Q |
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| T |
33509190 |
ctagcctccctaccaatgccttt |
33509212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 27923296 - 27923260
Alignment:
| Q |
72 |
attaaataaatacttgtt-ttttaattttaaatctaa |
107 |
Q |
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| T |
27923296 |
attaaataaatacttgtttttttaattttaaatctaa |
27923260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 8909 - 8806
Alignment:
| Q |
195 |
agctagttaattgttggagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgc |
294 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||| |||||||| | |||||||||||||||| |
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| T |
8909 |
agctagttaattgttggagttggatttggaggcttccagtttctgaaaatctaagacatttttgttggttggtgatgcatgatggcctccctaccaatgc |
8810 |
T |
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| Q |
295 |
cttt |
298 |
Q |
| |
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|||| |
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| T |
8809 |
cttt |
8806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 14917 - 14837
Alignment:
| Q |
118 |
gagtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagct |
198 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
14917 |
gagtgcttctccaaatggtcaatactcatctagttatggatataggtggtttgatcagaatctaactcaacaagtagagct |
14837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 13451467 - 13451643
Alignment:
| Q |
121 |
tgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagctagttaattgttggagttggata |
220 |
Q |
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||||| |||||||||||| | |||| || |||||||||||||| |||| |||| ||||||||| ||||| |||| | |||| ||||||||||||||| |
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| T |
13451467 |
tgcttatccaaatggtcagttctcaggtagttatggatataggtagttaaatcagaatctaacttaacaattagaacctgttatttgttggagttggatt |
13451566 |
T |
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| Q |
221 |
tggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgcctt |
297 |
Q |
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|||||| |||||| |||||||| |||||||| | ||||| | |||||||||||| |||||||| |||||||| |
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| T |
13451567 |
cagaggctatcggtttctaaaaatctaagacattttagctggcttgggatgcatgctagtctccctacgaatgcctt |
13451643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 298
Target Start/End: Complemental strand, 37665556 - 37665370
Alignment:
| Q |
118 |
gagtgcttctccaaatggtcaatactcaactacttatggatatag----gtggttagatcataatctaac---tcaacaagtagagctagttaattgttg |
210 |
Q |
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|||| ||||| |||||| | |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||||| |||||| ||||| |||||| |
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| T |
37665556 |
gagtacttcttcaaatgattaatactcaactagttaaggatatagctaggtggttagatcg-aatctaacgactcaacaaatagagccagttatttgttg |
37665458 |
T |
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| Q |
211 |
gagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgccttt |
298 |
Q |
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||| | || |||||||| | |||||||||||||| || ||||||||| | || |||||||||||||||||||||||||| |||| |
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| T |
37665457 |
gaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtcttt |
37665370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 53910630 - 53910708
Alignment:
| Q |
118 |
gagtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagag |
196 |
Q |
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|||||||||| | |||| ||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| |
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| T |
53910630 |
gagtgcttctttagatggccaatactcaactagttattgatatatgtggttagatcgaaatctaactcaacaagtagag |
53910708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 45560031 - 45559998
Alignment:
| Q |
72 |
attaaataaatacttgttttttaattttaaatct |
105 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45560031 |
attaaataaatacttgttttttaattttaaatct |
45559998 |
T |
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