View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_low_13 (Length: 307)
Name: NF4544_low_13
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_13 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 23617 - 23338
Alignment:
| Q |
19 |
atcattctctgtgaatttgagatacaactattatttgtaatgctttattctgctgccaattttagatacaactattatttgtaatgttggaaatgacaaa |
118 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
23617 |
atcattctctatgaatttgagatacaactattatttgtaatattttattctgctggcaattttagatacaactattatttgtaatgctggcaatgacaaa |
23518 |
T |
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| Q |
119 |
atgaaatgtgtgtgatgctttgtagggagaagttcatttgtctatcatgatgagaaattcaccactcacagttttatctaatttgattttgatatcttgc |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23517 |
atgaaatgtgtgtgatgctttgtagggagaggttcatttgtctatcaagatgagaaattcaccactcatagttttatctaatttgattttgatatcttgc |
23418 |
T |
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| Q |
219 |
ttcataattattcagcacattagtttaaatggatctttgtctaatttatcttttgcactctgtttgtgtctaagtataat |
298 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
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| T |
23417 |
ttcataattattcagcacataagtttaaatggatctttgtctaatttatcttgtgcactctgtttgcgtccaagtataat |
23338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 42836536 - 42836257
Alignment:
| Q |
19 |
atcattctctgtgaatttgagatacaactattatttgtaatgctttattctgctgccaattttagatacaactattatttgtaatgttggaaatgacaaa |
118 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
42836536 |
atcattctctatgaatttgagatacaactattatttgtaatattttattctgctggcaattttagatacaactattatttgtaatgctggcaatgacaaa |
42836437 |
T |
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| Q |
119 |
atgaaatgtgtgtgatgctttgtagggagaagttcatttgtctatcatgatgagaaattcaccactcacagttttatctaatttgattttgatatcttgc |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42836436 |
atgaaatgtgtgtgatgctttgtagggagaggttcatttgtctatcaagatgagaaattcaccactcatagttttatctaatttgattttgatatcttgc |
42836337 |
T |
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| Q |
219 |
ttcataattattcagcacattagtttaaatggatctttgtctaatttatcttttgcactctgtttgtgtctaagtataat |
298 |
Q |
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| T |
42836336 |
ttcataattattcagcacataagtttaaatggatctttgtctaatttatcttgtgcactctgtttgcgtccaagtataat |
42836257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 59 - 294
Target Start/End: Complemental strand, 36931391 - 36931157
Alignment:
| Q |
59 |
tgctttattctgctgccaattttagatacaactattatttgtaatgttggaaatgacaaaatgaaatgtgtgtgatgctttgtagggagaagttcatttg |
158 |
Q |
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|||||||||||||| |||||| |||||||||||||| ||| ||||| | | ||| |||||| ||| |||||||| ||| ||||| | ||||||||||| |
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| T |
36931391 |
tgctttattctgctaccaattctagatacaactattctttttaatgctagcaataacaaaaataaacgtgtgtgacgctgtgtagagggaagttcatttc |
36931292 |
T |
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| Q |
159 |
tctatcatgatgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattagtttaaatggatctttgt |
258 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||| ||| ||||||||||||| |
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| T |
36931291 |
tctatcatgatgagaaattcatcactcacagttttatctaatttgtttttgatatcttgcttcataatcatccatcacattaattt-aatggatctttgt |
36931193 |
T |
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| Q |
259 |
ctaatttatcttttgcactctgtttgtgtctaagta |
294 |
Q |
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| T |
36931192 |
ctaatttatcttttgtactctctttgtatctaagta |
36931157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 169 - 298
Target Start/End: Complemental strand, 42715576 - 42715447
Alignment:
| Q |
169 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattagtttaaatggatctttgtctaatttatc |
268 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42715576 |
tgagaaattcaccactcacacttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
42715477 |
T |
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| Q |
269 |
ttttgcactctgtttgtgtctaagtataat |
298 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
42715476 |
ttttgcactctgtttgtgtccaagtataat |
42715447 |
T |
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