View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_low_14 (Length: 279)
Name: NF4544_low_14
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 3674499 - 3674241
Alignment:
| Q |
6 |
aggagcagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgtta |
105 |
Q |
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| T |
3674499 |
aggagaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgtta |
3674400 |
T |
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| Q |
106 |
accctgttttatgctgctcctggccgaactctagattatcagggttgttttcgctgataatttgagggttaagaagaag--aannnnnnnnnaatctaat |
203 |
Q |
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| T |
3674399 |
accctgttttatgctgctcctggccgaactctagattatcaggattgttttcgctgataattttagggttaagacgaagaaaaaaaaatttgaatctaat |
3674300 |
T |
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| Q |
204 |
taacccttgcccgattgat--tatataggtcacctcacaacaaagagtgatgtgtatag |
260 |
Q |
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| T |
3674299 |
taacccttgcccgattgattatatataggtcacctcacaacaaagagtgatgtgtatag |
3674241 |
T |
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