View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4544_low_17 (Length: 238)

Name: NF4544_low_17
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4544_low_17
NF4544_low_17
[»] chr4 (4 HSPs)
chr4 (17-219)||(47105209-47105411)
chr4 (58-123)||(35851271-35851336)
chr4 (28-123)||(43077265-43077359)
chr4 (17-125)||(16501997-16502106)
[»] chr6 (2 HSPs)
chr6 (25-124)||(26534417-26534514)
chr6 (28-118)||(6946858-6946948)
[»] chr3 (4 HSPs)
chr3 (18-124)||(33753629-33753734)
chr3 (46-94)||(22948432-22948480)
chr3 (31-110)||(22948318-22948397)
chr3 (40-124)||(38489083-38489168)
[»] chr2 (2 HSPs)
chr2 (49-124)||(29043993-29044067)
chr2 (126-156)||(10176567-10176597)
[»] chr7 (2 HSPs)
chr7 (48-119)||(27028464-27028535)
chr7 (46-124)||(9350010-9350087)
[»] chr8 (2 HSPs)
chr8 (31-124)||(30235808-30235900)
chr8 (126-156)||(39901582-39901612)
[»] chr1 (1 HSPs)
chr1 (50-92)||(29938945-29938987)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 47105209 - 47105411
Alignment:
Q  17 cagagactgatgaagtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaagga 116  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47105209 cagagaccgatgaagtacaaacaaaaggtgccgtatataagcggaacacctataaacaaaacatcaataaagacacccctacaatcaacacccaaaagga 47105308  T
Q  117 catcacccctaagttacccaccattctttaaaggtaatctnnnnnnnncccttaaaatatcatcttttcccgtctgtcctgtgtgtttctccaatctttc 216  Q
    ||| | |||||| |||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47105309 cattatccctaaattacccaccattctttaaagataatctaaaaaaaacccttaaaatatcatcttttcccgtctgtcctgtgtgtttctccaatctttc 47105408  T
Q  217 att 219  Q
    |||    
T  47105409 att 47105411  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 35851336 - 35851271
Alignment:
Q  58 cggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacatcacc 123  Q
    |||||||| || |||||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  35851336 cggaacacataaaaacaaaacatcaataaagacacccctgcgatcaacacccaaaaggacatcacc 35851271  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 43077359 - 43077265
Alignment:
Q  28 gaagtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacatcacc 123  Q
    ||||||||||| ||||  | |||||||| || ||||||||  ||| ||| |||||| |||||||||||| | |||||||| |||||||||||||||    
T  43077359 gaagtacaaacaaaatacgtcgtatataggcagaacacctgaaaataaa-caccaacaaagacacccctgcgatcaacactcaaaaggacatcacc 43077265  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 16502106 - 16501997
Alignment:
Q  17 cagagactgatgaagtacaaactaaatgtgccgtatataagcggaacacctataaacaaaa-caccaataaagacacccctacaatcaacacccaaaagg 115  Q
    ||||||| | |||||||||||| ||| | || ||||||| |||||||||||  | |||||| | |||| |||||||||| | ||| ||||| ||||||||    
T  16502106 cagagaccggtgaagtacaaacaaaaggcgctgtatataggcggaacacctgaatacaaaaactccaacaaagacacccttgcaaacaacatccaaaagg 16502007  T
Q  116 acatcacccc 125  Q
    ||| ||||||    
T  16502006 acaccacccc 16501997  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 26534417 - 26534514
Alignment:
Q  25 gatgaagtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacatcaccc 124  Q
    |||||||||||||| ||| | | |||||||| |||||||||||  |||||| ||  ||| |||||||||||| |||| ||||||||||||||||||||||    
T  26534417 gatgaagtacaaacaaaaggcgtcgtatataggcggaacacctgaaaacaatac--caacaaagacacccctgcaataaacacccaaaaggacatcaccc 26534514  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 6946858 - 6946948
Alignment:
Q  28 gaagtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggaca 118  Q
    ||||||||||| ||| | ||||||||||   |||||||    |||||||||||||| |||||||||| | | ||||||||||| |||||||    
T  6946858 gaagtacaaacaaaaggcgccgtatatagatggaacactcgaaaacaaaacaccaacaaagacacccttgcgatcaacacccataaggaca 6946948  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 33753734 - 33753629
Alignment:
Q  18 agagactgatgaagtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggac 117  Q
    |||||| | ||| |||||||| |||  |||||||||||  | ||||||||| ||| |||||||||||| ||||| |||| | ||||||||||||||||||    
T  33753734 agagaccggtgaggtacaaacaaaagatgccgtatatagacagaacacctaaaaataaaacaccaatagagaca-ccctgcgatcaacacccaaaaggac 33753636  T
Q  118 atcaccc 124  Q
    |||||||    
T  33753635 atcaccc 33753629  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 22948432 - 22948480
Alignment:
Q  46 gccgtatataagcggaacacctataaacaaaacaccaataaagacaccc 94  Q
    |||||||||| |||||||||||  |||||||||||||| ||||||||||    
T  22948432 gccgtatatatgcggaacacctgaaaacaaaacaccaacaaagacaccc 22948480  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 22948318 - 22948397
Alignment:
Q  31 gtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacaccca 110  Q
    |||||| | ||| ||||| | ||||||| ||||||||  |||||||||||||| |||||||||| | | |||||||||||    
T  22948318 gtacaaccaaaaggtgccatttataagcagaacacctgaaaacaaaacaccaacaaagacacccatgcgatcaacaccca 22948397  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 38489168 - 38489083
Alignment:
Q  40 aaatgtgccgtatataagcggaacacctataaac-aaaacaccaataaagacacccctacaatcaacacccaaaaggacatcaccc 124  Q
    |||| ||||||||||| ||||||||||| ||||| ||||  |||| ||||||| || | | ||||||||||||||| ||| |||||    
T  38489168 aaatatgccgtatataggcggaacacctgtaaacgaaaatcccaacaaagacatccatgcgatcaacacccaaaagaacaacaccc 38489083  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 29043993 - 29044067
Alignment:
Q  49 gtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacatcaccc 124  Q
    ||||||| |||||||||||  |||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||    
T  29043993 gtatataggcggaacacctgaaaacaaaa-accaacaaagacacccctgcgatcaacacccaaaagtacatcaccc 29044067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 10176597 - 10176567
Alignment:
Q  126 taagttacccaccattctttaaaggtaatct 156  Q
    |||||||||||||||||||||||||||||||    
T  10176597 taagttacccaccattctttaaaggtaatct 10176567  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 27028535 - 27028464
Alignment:
Q  48 cgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacat 119  Q
    |||||||| | |||||||||| |||||||||||  ||||||||| || | | ||||||||||||||||||||    
T  27028535 cgtatataggtggaacacctaaaaacaaaacactgataaagacatccatgcgatcaacacccaaaaggacat 27028464  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 9350087 - 9350010
Alignment:
Q  46 gccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacatcaccc 124  Q
    |||||||||| |||||||||||  ||| ||| |||||| |||||||||||| |||||||| |||| ||||||| |||||    
T  9350087 gccgtatataggcggaacacctggaaa-aaatcaccaacaaagacacccctgcaatcaacccccataaggacaacaccc 9350010  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 30235808 - 30235900
Alignment:
Q  31 gtacaaactaaatgtgccgtatataagcggaacacctataaacaaaacaccaataaagacacccctacaatcaacacccaaaaggacatcaccc 124  Q
    |||||||||||| |  ||||||||| |||||||| |   ||||||| |||||| |||||||||| | | ||||||||||||||||||| |||||    
T  30235808 gtacaaactaaaggctccgtatataggcggaacatccgaaaacaaa-caccaacaaagacacccttgcgatcaacacccaaaaggacaacaccc 30235900  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 39901612 - 39901582
Alignment:
Q  126 taagttacccaccattctttaaaggtaatct 156  Q
    |||||||||||||||||||||||||||||||    
T  39901612 taagttacccaccattctttaaaggtaatct 39901582  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 29938945 - 29938987
Alignment:
Q  50 tatataagcggaacacctataaacaaaacaccaataaagacac 92  Q
    |||||| |||||||||||| |||||||||||||| ||||||||    
T  29938945 tatataggcggaacacctaaaaacaaaacaccaacaaagacac 29938987  T

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