View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4544_low_4 (Length: 460)
Name: NF4544_low_4
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 27832105 - 27832536
Alignment:
| Q |
11 |
cacagacactagaaagtttttaaaacaatttggaactgatgattcattcaacataatatggtgattagtggaatcaatatagacaagaactgaaaaaaca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27832105 |
cacacacactagaaagtttttaaaacaatttggaactgatgattcattcaacataatatggtgattagtggaatcaatatagacaaaaactgaaaaaaca |
27832204 |
T |
|
| Q |
111 |
tgaagttttgaaggttttttatgcatatgtttattttacttcggtttagatgctataaacttttagcgattctcatagattcaattctaataaacttagt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27832205 |
tgaagttttgaaggttttttatgcataggtttattttacttcggtttagatgctataaacttttagcgattctcatagattcaattctaataaacttagt |
27832304 |
T |
|
| Q |
211 |
tttacaacaaatcaaattcagtctatcctaactattgaagggaacgtgcacttacaatcttggtannnnnnnnnnnnnnnnnnatggaaaaaacttacat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27832305 |
tttacaacaaatcaaattcagtctatcctaactattgaagggaacgtgcacttacaatcttggtattttttttctttctttttatggaaaaaacttacat |
27832404 |
T |
|
| Q |
311 |
caattgagaaatatctttgaaataattccatcaaattaaagtaggtatatttaattatatttgaagtttttcttactgatattttagatcaaaggattag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27832405 |
caattgagaaatatctttgaaataattccatcaaattaaagtaggtatatttaattatatttgaagtttttcttactgatattttagatcaaaggattag |
27832504 |
T |
|
| Q |
411 |
gaagcaagtgctaaatgagataaaggaaatta |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27832505 |
gaagcaagtgctaaatgagataaaggaaatta |
27832536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University