View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_low_5 (Length: 458)
Name: NF4544_low_5
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 439
Target Start/End: Original strand, 30054519 - 30054963
Alignment:
| Q |
12 |
agagacagtcaatgatttgatattagaaaactagtagtagccagttgagtaggactgcagattcatcttccaacgggcgatt---gaatccgatgtctgc |
108 |
Q |
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| T |
30054519 |
agagacagtcaatgatttgatattagaaaact-gtagtagccagttgagtaggactgcagattcgtcttccaaggggcgattaatgaatccgatgtctgc |
30054617 |
T |
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| Q |
109 |
atccttgtaaacgtgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
208 |
Q |
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| T |
30054618 |
atccatgtaaacatgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
30054717 |
T |
|
| Q |
209 |
ttgcacatcaaactagcat---------atccatac------atagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcctccacaa |
293 |
Q |
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| T |
30054718 |
ttgccaatcaaactagcattggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcctccacaa |
30054817 |
T |
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| Q |
294 |
gtataaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagag |
393 |
Q |
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| T |
30054818 |
gtctaaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaaagcaggcaaattaagagag |
30054917 |
T |
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| Q |
394 |
ttggggaagtatactttgttaaatactccaatacgaacgtgaatag |
439 |
Q |
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| T |
30054918 |
ttggggaagtatactttgttaaatactacaatacgaacgtgaatag |
30054963 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 45906383 - 45906437
Alignment:
| Q |
232 |
atacatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcc |
286 |
Q |
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| T |
45906383 |
atacatagttaaattgacaagtgttccacttgatatgcaaagggtttttgcatcc |
45906437 |
T |
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