View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4544_low_6 (Length: 450)

Name: NF4544_low_6
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4544_low_6
NF4544_low_6
[»] chr1 (9 HSPs)
chr1 (19-439)||(47593644-47594064)
chr1 (312-420)||(47619822-47619930)
chr1 (19-114)||(47627670-47627765)
chr1 (351-403)||(47584895-47584947)
chr1 (30-119)||(47698621-47698710)
chr1 (30-103)||(47700921-47700994)
chr1 (33-85)||(6525554-6525606)
chr1 (27-112)||(47584580-47584665)
chr1 (363-423)||(47628050-47628110)
[»] chr8 (1 HSPs)
chr8 (27-112)||(10401428-10401513)
[»] chr6 (5 HSPs)
chr6 (21-112)||(20233473-20233564)
chr6 (21-112)||(22127457-22127548)
chr6 (21-112)||(18995491-18995582)
chr6 (21-88)||(22085910-22085977)
chr6 (21-104)||(22207081-22207164)
[»] chr5 (1 HSPs)
chr5 (320-418)||(469413-469511)
[»] chr3 (2 HSPs)
chr3 (329-374)||(3081219-3081264)
chr3 (329-374)||(3095656-3095701)
[»] scaffold0074 (1 HSPs)
scaffold0074 (21-112)||(49877-49968)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-112)||(7411-7502)
[»] chr7 (1 HSPs)
chr7 (19-85)||(20264195-20264261)
[»] scaffold0264 (1 HSPs)
scaffold0264 (255-371)||(14919-15038)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 47593644 - 47594064
Alignment:
Q  19 acatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaaaagaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47593644 acatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaaaagaaa 47593743  T
Q  119 tataaatccttatgaatcacatcatgttaccgaaggcctcacaagttatgtgagtatgataacctagttagtcaattgaagtttattcaagttgagagag 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47593744 tataaatccttatgaatcacatcattttaccgaaggcctcacaagttatgtgagtatgataacctagttagtcaattgaagtttattcaagttgagagag 47593843  T
Q  219 gcttgatgttttgactaactaatatgataaactttacaggaatggagacaatggaagaatgaaactccattaatcatattggatccaaaaattgaaaatt 318  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47593844 gcttgatgttttgactaactaatatgataaactttacaggtatggagacaatggaagaatgaaactccattaatcatattggatccaaaaattgaaaatt 47593943  T
Q  319 attctcgtattgaagttattaagtgcatacagattggtttgttatgtgttcaagaaaatccaaatataagacctacaatggcaacggttgtttcatatct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47593944 attctcgtattgaagttattaagtgcatacagattggtttgttatgtgttcaagaaaatccaaatgtaagacctacaatggcaacggttgtttcatatct 47594043  T
Q  419 taatagtcattcaccagaatt 439  Q
    |||||||||||||||||||||    
T  47594044 taatagtcattcaccagaatt 47594064  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 47619822 - 47619930
Alignment:
Q  312 gaaaattattctcgtattgaagttattaagtgcatacagattggtttgttatgtgttcaagaaaatccaaatataagacctacaatggcaacggttgttt 411  Q
    ||||| |||||||  ||||||||||| || ||||| || |||||||| |||||||| |||||||||||||||   ||||||||||||||||| || ||||    
T  47619822 gaaaaatattctcaaattgaagttataaaatgcattcaaattggtttattatgtgtccaagaaaatccaaatgctagacctacaatggcaacagtcgttt 47619921  T
Q  412 catatctta 420  Q
    |||||||||    
T  47619922 catatctta 47619930  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 47627670 - 47627765
Alignment:
Q  19 acatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaaaa 114  Q
    ||||||| || ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| || || ||| | |||||||||| ||||||||    
T  47627670 acatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaa 47627765  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 47584895 - 47584947
Alignment:
Q  351 attggtttgttatgtgttcaagaaaatccaaatataagacctacaatggcaac 403  Q
    |||||||||||||||||||||||||||||| ||   |||||||||||||||||    
T  47584895 attggtttgttatgtgttcaagaaaatccagatgacagacctacaatggcaac 47584947  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 47698621 - 47698710
Alignment:
Q  30 gaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaaaagaaat 119  Q
    ||||||||||||| ||||||  ||||||| || ||||| ||||| |||||||| ||||| ||||| ||||| |||| |  ||||||||||    
T  47698621 gaatatgcaatgcatggacaactttcagaaaaatcggacgttttcagttttggagtcatagttttggagataattagttcaaaaagaaat 47698710  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 47700994 - 47700921
Alignment:
Q  30 gaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattat 103  Q
    |||||||||||| ||||||| |||||||  || |||||||||||||||||||| ||  | ||| ||||||||||    
T  47700994 gaatatgcaatgtttggacaattttcagtcaaatcggatgtttttagttttggcgtactagttctagagattat 47700921  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 6525554 - 6525606
Alignment:
Q  33 tatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgt 85  Q
    |||||||||| |||||| ||||||| |||||| ||||| ||||||||||||||    
T  6525554 tatgcaatgcatggacaattttcagtgaagtcagatgtatttagttttggtgt 6525606  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 47584580 - 47584665
Alignment:
Q  27 ccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||||||||| |||| |||| ||||||| | ||| || ||||| | |||||||||  |||| ||| |||||||||||| ||||||    
T  47584580 ccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaaa 47584665  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 47628050 - 47628110
Alignment:
Q  363 tgtgttcaagaaaatccaaatataagacctacaatggcaacggttgtttcatatcttaata 423  Q
    ||||| |||||||||||| ||   || |||||||||| ||| |||||||||||||||||||    
T  47628050 tgtgtccaagaaaatccagatgataggcctacaatgggaactgttgtttcatatcttaata 47628110  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 10401513 - 10401428
Alignment:
Q  27 ccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||| ||||||||| |||||  |||| || ||||||||||||||    
T  10401513 ccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaa 10401428  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 20233473 - 20233564
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||| ||||||||||| ||||| || || ||||| ||||| || ||||||| ||||||||| ||||| |||||||| |||||||| |||||    
T  20233473 atgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaa 20233564  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 22127457 - 22127548
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||| ||||||||||| ||||| || || ||||| ||||| || ||||||| ||||||||| ||||| |||||||| |||||||| |||||    
T  22127457 atgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaa 22127548  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 18995582 - 18995491
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||| || |||||||||||||||||||| ||||| || || || ||  ||| ||||||||| || ||  |||||||||||||| |||||||    
T  18995582 atgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaa 18995491  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 22085977 - 22085910
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcat 88  Q
    ||||| ||||||||||||||| ||||||| ||||| || || || ||||||| ||||||||| |||||    
T  22085977 atgtcgccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcat 22085910  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 22207081 - 22207164
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattatt 104  Q
    ||||| ||||||||||||||||||||||| ||||| || || || ||  ||| ||||||||| || ||  ||||||||||||||    
T  22207081 atgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattatt 22207164  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 469511 - 469413
Alignment:
Q  320 ttctcgtattgaagttattaagtgcatacagattggtttgttatgtgttcaagaaaatccaaatataagacctacaatggcaacggttgtttcatatct 418  Q
    ||||| || |||||||||||| ||||| ||| ||||||| ||||||||||||||||||||  ||   |||||||||||||||   | ||||||||||||    
T  469511 ttctcatagtgaagttattaaatgcattcagcttggtttattatgtgttcaagaaaatcctgatgatagacctacaatggcacaagctgtttcatatct 469413  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 3081219 - 3081264
Alignment:
Q  329 tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa 374  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||    
T  3081219 tgaagttattaaatgcatacacattggtttgttatgtgtacaagaa 3081264  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 3095656 - 3095701
Alignment:
Q  329 tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa 374  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||    
T  3095656 tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaa 3095701  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 49877 - 49968
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||| || |||||||||||||||||||| ||||| || || || ||  ||| ||||||||| || ||  |||||||||||||| |||||||    
T  49877 atgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaa 49968  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 7411 - 7502
Alignment:
Q  21 atgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 112  Q
    ||||| || |||||||||||||||||||| ||||| || || || ||  ||| ||||||||| || ||  |||||||||||||| |||||||    
T  7411 atgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagattattgctggaaa 7502  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 20264195 - 20264261
Alignment:
Q  19 acatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgt 85  Q
    ||||||| || |||||||||||||  |||   |||||||||||||| ||||||||||| ||||||||    
T  20264195 acatgtctcccgaatatgcaatgcaaggattattttcagagaagtcagatgtttttagctttggtgt 20264261  T

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Target: scaffold0264 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 371
Target Start/End: Complemental strand, 15038 - 14919
Alignment:
Q  255 caggaatggagacaatggaagaatgaaactccattaatcatattggatccaaaaatt---gaaaattattctcgtattgaagttattaagtgcatacaga 351  Q
    |||| |||||||||||||| | || |||| || ||||  |||||||| ||||| |||   ||| ||||||||   | |||||| ||||||||||| ||||    
T  15038 caggtatggagacaatggatggatcaaacacctttaagtatattggacccaaatattaaagaagattattctacaaatgaagtcattaagtgcattcaga 14939  T
Q  352 ttggtttgttatgtgttcaa 371  Q
    ||||| | ||||||||||||    
T  14938 ttggtctattatgtgttcaa 14919  T

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