View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_low_7 (Length: 447)
Name: NF4544_low_7
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Original strand, 24401336 - 24401755
Alignment:
| Q |
11 |
catcatcactcaatttctggagattttagattatgcttattttttaatttcaagcctcttgataattaaagcaacaccatataacaaccaaacccttttt |
110 |
Q |
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|||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401336 |
catcttcactcaatttctgtcaatttcagattatgcttattttttaatttcaagcctcttgataattaaagcaacaccatataacaaccaaacccttttt |
24401435 |
T |
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| Q |
111 |
taactaactgagttagctacataaatcaaacaatgtcatagagacaagcactccctaaattatagatattcagtttgatcgcataagtatttttagatcg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401436 |
taactaactgagttagctacataaatcaaacaatgtcatagagacaaacactccctaaattatagatattcagtttgatcgcataagtatttttagatcg |
24401535 |
T |
|
| Q |
211 |
gtcaatttagttcctgaatataaactgtcatgaatcatgaaccagatctaaagatatacatttaaataaagatattgcttaattggttctatagttaaag |
310 |
Q |
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| T |
24401536 |
gtcaatttagttcctgaatataaactgtcatgaatcatgaaccagatctaaagatatacatttaaataaagatattgcttaattggttctatagttaaag |
24401635 |
T |
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| Q |
311 |
caacatcacgacggnnnnnnntattagtatcccaaaatcgatattatgcaactataaatattcatacttcataggactttggttgcacttgcagaaaatg |
410 |
Q |
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| T |
24401636 |
caacatcatgacgtaaaaaaatattagtatcccaaaatcgatattatgcaactataaatattcatacttcataggactttggttgcacttgcagaaaatg |
24401735 |
T |
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| Q |
411 |
gaaaagttatgggaagtttg |
430 |
Q |
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| T |
24401736 |
gaaaagttatgggaagtttg |
24401755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 24378543 - 24378728
Alignment:
| Q |
46 |
cttattttttaatttcaagcctcttgataattaaagcaacaccatataacaaccaaacccttttttaactaactgagttagctacataaatcaaacaatg |
145 |
Q |
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||||||| ||||||| ||| ||||||||| |||| ||| || |||||||||||||||||||||||| |||| |||| |||||||| |||||||||||| |
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| T |
24378543 |
cttatttcttaattttaagtctcttgatagttaaggcagcatcatataacaaccaaacccttttttcgctaaacgagtcagctacattaatcaaacaatg |
24378642 |
T |
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| Q |
146 |
tcatagagacaagcac--------tccctaaattatagatattcagtttgatcgcataagtatttttagatcggtcaatttagttc |
223 |
Q |
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|| ||||| || ||| ||||||||||||||| || |||||||||| |||||| ||||| ||| |||||||||||||| |
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| T |
24378643 |
tcgtagagtgaaacactgagtcagtccctaaattatagaccttgagtttgatcgtataagtctttttggataggtcaatttagttc |
24378728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 24378901 - 24378961
Alignment:
| Q |
370 |
attcatacttcataggactttggttgcacttgcagaaaatggaaaagttatgggaagtttg |
430 |
Q |
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||||| ||||||||||| || ||||||||||||||||||||||| | |||||||||||||| |
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| T |
24378901 |
attcacacttcataggaattgggttgcacttgcagaaaatggaagaattatgggaagtttg |
24378961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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