View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4544_low_9 (Length: 377)
Name: NF4544_low_9
Description: NF4544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4544_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 28605937 - 28606286
Alignment:
| Q |
10 |
atgaagagtggacgaaaggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagtt |
109 |
Q |
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| T |
28605937 |
atgaagagtggacgaaaggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagtt |
28606036 |
T |
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| Q |
110 |
ttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattctctttaattggctaattgctttctgttatttctgttacacat |
209 |
Q |
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| T |
28606037 |
ttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattctctttaattggctaattgctttctgttatttctgttacacat |
28606136 |
T |
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| Q |
210 |
ccactgaaaaccgttccaattacattaacacacttactattactttaaaatttcaatagtcaaacgtaaaacataattcataagcaccttttattacatt |
309 |
Q |
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| T |
28606137 |
ccactgaaaaccgttccaattacattaacacacttactattactttaaaatttcaaaagtcaaacgtaaaacataattcataagcacctttcattacatt |
28606236 |
T |
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| Q |
310 |
aataatacatggacatccactttttatacacttatctgtgacaatggtta |
359 |
Q |
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| T |
28606237 |
aataatacatggacatccactttttatacacttatctgtgacaatggtta |
28606286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 28635847 - 28636005
Alignment:
| Q |
10 |
atgaagagtggacgaaaggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagtt |
109 |
Q |
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| T |
28635847 |
atgaagagtggaagaagggatagcaaagaaagttatgcaaatgtggtggaagaattcattccaaaccataatgactcaatatccttagtgttgtctcgtt |
28635946 |
T |
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| Q |
110 |
ttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattct |
168 |
Q |
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| T |
28635947 |
ttcaagctatcggtgttgacgttgaagccacggttgctcttttaggtaccaaacattct |
28636005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 28656354 - 28656512
Alignment:
| Q |
10 |
atgaagagtggacgaaaggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagtt |
109 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||| ||| || |||| |||||| || ||| |
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| T |
28656354 |
atgaagagtggaagaagggatagcaaagaaagctatgtaacggtggtggaagaatccattccaagccataatgcctccatgtccttagtgctcactcgtt |
28656453 |
T |
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| Q |
110 |
ttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattct |
168 |
Q |
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| T |
28656454 |
tccaagctattggtgttgatgttgaagccacggttgctcttttaggtaccaaacattct |
28656512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 28663394 - 28663542
Alignment:
| Q |
10 |
atgaagagtggacgaaaggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagtt |
109 |
Q |
| |
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||||||| ||||||| |||| ||||||||||| |||||| |||| ||| ||||||||||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
28663394 |
atgaagacaggacgaagggatggcaaagaaagccatgtaacaatggtagaagaattcattccaaatcataatgactccatatccttagtgctttctcgtt |
28663493 |
T |
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| Q |
110 |
ttcaagccattggcattgacgttgaagccacggttgctcttttaggtac |
158 |
Q |
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||||||||||||| | ||||||||||| || ||||||||||||||||| |
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| T |
28663494 |
ttcaagccattggtgtagacgttgaagcaactgttgctcttttaggtac |
28663542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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