View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545-Insertion-4 (Length: 577)
Name: NF4545-Insertion-4
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Original strand, 7478425 - 7478987
Alignment:
| Q |
8 |
gttagaaatgtaaaatgttagtcacattattcatttttaatttttaggataattttagctactaatttgaacatgaaatgaaaaacgaaaaatatcnnnn |
107 |
Q |
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| T |
7478425 |
gttagaaatgtaaaatgttagtcacattattcatttttaatttttaggataattttagctactaatttgaacatgaaatgaaaaacgaaaaatatcattt |
7478524 |
T |
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| Q |
108 |
nnnnnnnnng-gtgttaactttccggttctcaaggaaaaggggggtcccggtaatctggagttataaagtgtggccaagagttgttctacctgagcccaa |
206 |
Q |
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| T |
7478525 |
tttttttttgtgtgttaactttccggttctcaaggaaaaagggg-tcccggtaatctggagttataaagtgtggccaagagttgttctacctgagcccaa |
7478623 |
T |
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| Q |
207 |
ttgcctggttgaacaatgtcaatttggttgttaggaatatgaaatgtgagtcaaattagtcgttttttaggatagttttagggatgtactatggtgctaa |
306 |
Q |
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| T |
7478624 |
ttgcctggttgaacaatgtcaatttggttgttaggaatatgaaatttgagtcaaattagtcgttttttaggatagttttagggatgtactatggtgctaa |
7478723 |
T |
|
| Q |
307 |
tttgatctatgtttgatatttttaagaacataattgatacttttgtttttgagtgaccaactagatcttagtgttttttgtggaggactaatttggtagt |
406 |
Q |
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| T |
7478724 |
tttgatctatgtttgatatttttaagaacataattgatatttttgtttttgagtgaccaactagatcttagtgttttttgtggaggactaatttggtagt |
7478823 |
T |
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| Q |
407 |
ttgagtatttagtatatattaggattgacttatttgaatttttaacttatttaatggcataagcacttgtgaggctcttagttagagcttacgaaaacag |
506 |
Q |
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| T |
7478824 |
ttgagtatttaggatatattaggattgacttatttgaatttttaacttatttaatggcataaacacttgtgaggctcttagttagagcttacgaaaacag |
7478923 |
T |
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| Q |
507 |
cttatgagttattggacctggctcctctaaagtgagtaatgtcaagtgttaatttacaaatcaa |
570 |
Q |
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| T |
7478924 |
cttatgagttattggacctgactcctctaaagtgagtaatgtcaagtgttaatttacaaatcaa |
7478987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 7479742 - 7479782
Alignment:
| Q |
361 |
gaccaactagatcttagtgttttttgtggaggactaatttg |
401 |
Q |
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| T |
7479742 |
gaccaaatagatcttagtgtttttattggaggactaatttg |
7479782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 41016336 - 41016283
Alignment:
| Q |
423 |
tattaggattgacttatttgaatttttaacttatttaatggcataagcacttgt |
476 |
Q |
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| T |
41016336 |
tatttggattgacttatttgaagtttgaacttatctattagcataagcacttgt |
41016283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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