View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4545_high_6 (Length: 322)

Name: NF4545_high_6
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4545_high_6
NF4545_high_6
[»] chr4 (1 HSPs)
chr4 (19-310)||(30785918-30786212)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 30785918 - 30786212
Alignment:
Q  19 ttcttgccattctatctggacttaacttgttaattgattcatt----ctaaataggattttgattatgtttaatagatatgtatatgctttgatgactaa 114  Q
    |||||||||||||||||||| |||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30785918 ttcttgccattctatctggagttaacttgttgattgattcattaattctaaataggattttgattatgtttaatagatatgtatatgctttgatgattaa 30786017  T
Q  115 ttataggtttgattgtgaaattactttcgttaattataatcacgtgttaaacaatttaataatgcatttcttgttataataccatgaaacatcgctgctg 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30786018 ttataggtttgattgtgaaattacttttgttaattataatcacgt-ttaaacaatttaataatgaatttcttgttataataccatgtaacatcgctgctg 30786116  T
Q  215 gaatctgtgacagaaacattgccagtataccatgaaacaatgaagttgcaacaatgcatcgaacatgtttgttgtttggtttttcgccatccttca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30786117 gaatctgtgacagaaacattgccagtataccatgaaacaatgaagttgcaacaatgcatcgaacatgtttgttgtttggtttttcgccatccttca 30786212  T

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