View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546-Insertion-1 (Length: 563)
Name: NF4546-Insertion-1
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Original strand, 45548233 - 45548781
Alignment:
| Q |
8 |
aaccatgccttttcctggactattcacattgctctcttcaaacactttgtcagacttcccaacctcactatccaactttccatcctcttttttcaatggc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548233 |
aaccatgccttttcctggactattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctcttttttcaatggc |
45548332 |
T |
|
| Q |
108 |
tcttcttttcctttattcaaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548333 |
tcttcttttcctttattcaaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtga |
45548432 |
T |
|
| Q |
208 |
cccctttgtccccattttttgtttcagttccgtcattagttccatatactttggatttcactgcacttcctacctctgcaacctttccataaactggagc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548433 |
cccctttgtccccattttttgtttcagttccgtcattagttccatatactttggatttcactgcacttcctacctctgcaacctttccataaactggagc |
45548532 |
T |
|
| Q |
308 |
taatttctcagtaagagaataaccaacgttatttccattctcacttttttgatgctcaactttctcatcatttccgagcttagaagcttcgtcattttca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548533 |
taatttctcagtaagagaataaccaacgttatttccattctcacttttttgatgctcaactttctcatcatttccgagcttagaagcttcgtcattttca |
45548632 |
T |
|
| Q |
408 |
ggagggagagttttatcagcttcttccgcagacgagatttcaatttcatctgtgtaacctttttgttttggttgcgtctccactggttcttcataacctg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548633 |
ggagggagagttttatcagcttcttccgcagacgagatttcaatttcatctgtgtaacctttttgttttggttgcgtctccactggttcttcataacctg |
45548732 |
T |
|
| Q |
508 |
attgtttctcaatggtgtttgtgatggtatcgaaattttctctagtttc |
556 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||||| |||| |
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| T |
45548733 |
attgtttctcaacggtgtttgtgatggtatcaaaattttctctaatttc |
45548781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 45542911 - 45543148
Alignment:
| Q |
8 |
aaccatgccttttcctggactattcacattgctctcttcaaacactttgtcagacttcccaacctcactatccaactttccatcctcttttttcaatggc |
107 |
Q |
| |
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|||||| |||||||||| ||||||| ||||||||||||||| ||||| || |||||| || |||||||| |||| ||||||| ||||||||||||||| |
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| T |
45542911 |
aaccattccttttcctgaactattcgcattgctctcttcaagaactttctctgacttctcatcctcactagccaatattccatcttcttttttcaatggc |
45543010 |
T |
|
| Q |
108 |
tcttcttttcctttattcaaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtga |
207 |
Q |
| |
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|||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| |
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| T |
45543011 |
tcttctttccctttatgtaaagcttctgaaaccacctcagaaagtgccttatcttcttcactaggccttagcttctcagccagatagtccttcacagaag |
45543110 |
T |
|
| Q |
208 |
cccctttgtccccattttttgtttcagttccgtcatta |
245 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||| |
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| T |
45543111 |
cccctttgtctccattttttgtttcagttccctcatta |
45543148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 45530020 - 45530257
Alignment:
| Q |
8 |
aaccatgccttttcctggactattcacattgctctcttcaaacactttgtcagacttcccaacctcactatccaactttccatcctcttttttcaatggc |
107 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||||| ||||| | |||||| || |||||||| |||| |||||||||||||| |||||||| |
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| T |
45530020 |
aaccatgccttttcttggactagtcacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatcctcttttgtcaatggc |
45530119 |
T |
|
| Q |
108 |
tcttcttttcctttattcaaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtga |
207 |
Q |
| |
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|| ||||| |||| || |||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| || || |||||||| |
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| T |
45530120 |
tcgtctttcccttcatgtaaagcttctaaaatcacctaagaaagtgccttatcttcttcactaggccttagcttctcagccaaatagtctttcacagtag |
45530219 |
T |
|
| Q |
208 |
cccctttgtccccattttttgtttcagttccgtcatta |
245 |
Q |
| |
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||||||| || | |||||||||||||||||| |||||| |
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| T |
45530220 |
cccctttatctcgattttttgtttcagttccctcatta |
45530257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 45543702 - 45543754
Alignment:
| Q |
373 |
catcatttccgagcttagaagcttcgtcattttcaggagggagagttttatca |
425 |
Q |
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||||||| | ||||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
45543702 |
catcattactgagcttagaagtttcatcattttcaaaagggagagttttatca |
45543754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 7005972 - 7005774
Alignment:
| Q |
15 |
ccttttcctggactatt--cacattgctctcttcaaacactttgtcagacttcccaacctcactatccaactttccatcctcttttttcaatggctcttc |
112 |
Q |
| |
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|||||| |||||||||| ||||| |||||||||| ||||||| || |||||| || ||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
7005972 |
cctttttctggactatttacacatagctctcttcacacactttctctgacttctcattctcactacccaattttccatcctcttttttcaaaggctcttc |
7005873 |
T |
|
| Q |
113 |
ttttcctttattcaaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtgacccc |
211 |
Q |
| |
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||| ||||||| |||| |||||||||||||| ||| ||||| || ||||||||||||||| |||| | ||| ||||| | ||||||||||| ||||| |
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| T |
7005872 |
tttccctttatgaaaagcttctgaaatcaccttagagagtgcattgtcttcttcactaggccttagttactcagccaaacagtccttcacagtaacccc |
7005774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 485 - 556
Target Start/End: Original strand, 21846614 - 21846685
Alignment:
| Q |
485 |
ctccactggttcttcataacctgattgtttctcaatggtgtttgtgatggtatcgaaattttctctagtttc |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||| |||||||||||||| |
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|
| T |
21846614 |
ctccactggttcttcataacctgattgtttttcaacggtgtttgtaatggtattgaagttttctctagtttc |
21846685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 537
Target Start/End: Complemental strand, 19671315 - 19671274
Alignment:
| Q |
496 |
cttcataacctgattgtttctcaatggtgtttgtgatggtat |
537 |
Q |
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| T |
19671315 |
cttcataacctggttgtttctcaatggtggttgggatggtat |
19671274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 36610400 - 36610320
Alignment:
| Q |
243 |
ttagttccatatactttggatttcactgcacttcctacctctgcaacct--ttccataaactggagctaatttctcagtaa |
321 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||| |
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| T |
36610400 |
ttagttctatacactttggatttcactgcacttcctacctttgcaaccttgtgtaataaactggagctaatttctaagtaa |
36610320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 36623592 - 36623543
Alignment:
| Q |
296 |
ataaactggagctaatttctcagtaagagaataaccaacgttatttccat |
345 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||| ||| ||||||| |
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| T |
36623592 |
ataaactggagctaatttctcagtaagagagtaagcaaagttctttccat |
36623543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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