View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4546-Insertion-2 (Length: 548)

Name: NF4546-Insertion-2
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4546-Insertion-2
NF4546-Insertion-2
[»] chr3 (17 HSPs)
chr3 (83-548)||(5155644-5156100)
chr3 (359-541)||(5159940-5160123)
chr3 (418-518)||(46479515-46479615)
chr3 (425-517)||(46497677-46497769)
chr3 (415-514)||(46526729-46526830)
chr3 (418-540)||(51942855-51942977)
chr3 (418-525)||(47397615-47397722)
chr3 (441-529)||(45884024-45884112)
chr3 (419-507)||(46544183-46544271)
chr3 (445-518)||(46473681-46473754)
chr3 (401-541)||(46490417-46490557)
chr3 (417-514)||(45902676-45902775)
chr3 (435-505)||(46549300-46549370)
chr3 (432-495)||(4581745-4581808)
chr3 (424-501)||(46538714-46538792)
chr3 (457-492)||(4614165-4614200)
chr3 (441-502)||(16025229-16025290)
[»] chr4 (5 HSPs)
chr4 (304-518)||(35162049-35162264)
chr4 (317-505)||(35155038-35155230)
chr4 (441-506)||(15555760-15555825)
chr4 (115-194)||(28286910-28286990)
chr4 (426-483)||(28286744-28286801)
[»] chr8 (3 HSPs)
chr8 (418-541)||(9692995-9693117)
chr8 (316-517)||(9675997-9676199)
chr8 (425-495)||(21464513-21464583)
[»] chr2 (5 HSPs)
chr2 (424-534)||(20358860-20358970)
chr2 (424-518)||(20169332-20169426)
chr2 (434-534)||(20144358-20144458)
chr2 (111-194)||(20154832-20154915)
chr2 (144-197)||(20144166-20144219)
[»] chr7 (6 HSPs)
chr7 (440-548)||(17708020-17708128)
chr7 (459-548)||(16721916-16722005)
chr7 (459-548)||(17698930-17699019)
chr7 (440-515)||(17717844-17717919)
chr7 (441-548)||(17735675-17735782)
chr7 (466-546)||(17744881-17744961)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 83 - 548
Target Start/End: Original strand, 5155644 - 5156100
Alignment:
Q  83 tatgatatatttggattgccaaagctatattgatcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaattttatagcacta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  5155644 tatgatatatttggattgccaaagctatattgatcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaattttata------ 5155737  T
Q  183 aagagaaataaacttccctgatcctttggcatacatgattgttcaactaaaactattctagagatgtatcttctaagaaaacgattgatgaatacagctt 282  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5155738 aagagaaataactttccc-gatcctttggcatacatgattgttcaactaaaactattctagagatgtatcttctatgaaaacgattgatgaatacagctt 5155836  T
Q  283 ccctttccttaannnnnnnnn---ctagcatccgattaatttagaaccataatatatgaaaattagactaacaaaatgttaatttgttctattgaaatac 379  Q
    ||||||||||||            ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5155837 ccctttccttaattttttttctttctagcatccaattaatttagaaccataatatatgaaaattagactaacaaaaagttaatttgttctattgaaatac 5155936  T
Q  380 ttccaaaaagaatttatttgttctatttctatagttgatttt-aaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggct 478  Q
    ||||||||||||||||||||||||||      ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155937 ttccaaaaagaatttatttgttctat------agtggatttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggct 5156030  T
Q  479 gaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156031 gaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 5156100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 359 - 541
Target Start/End: Original strand, 5159940 - 5160123
Alignment:
Q  359 taatttgttctattgaaatacttccaaaaagaatttatttgttctatttctatagttgatttt-aaatttgatttggttttaaaggctgttgaagtgact 457  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||  ||| |||||||| ||||||||| | ||||| |||||| |||||||||||    
T  5159940 taatttcttctattgaattacttccaaaaagaatctatttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgact 5160039  T
Q  458 aaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacc 541  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  5160040 aaagaagtgaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctctaagatcagttgataggttaacc 5160123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 46479515 - 46479615
Alignment:
Q  418 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 517  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46479515 ttttaaatttgatatggttttaaaggctgttgaagtgaccaatgaagtgaattcatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 46479614  T
Q  518 c 518  Q
    |    
T  46479615 c 46479615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 425 - 517
Target Start/End: Original strand, 46497677 - 46497769
Alignment:
Q  425 tttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 517  Q
    |||||| ||||||||||||||||||||||||  || |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  46497677 tttgatatggttttaaaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttattaaagaacttcttcct 46497769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 46526830 - 46526729
Alignment:
Q  415 tgattttaaatttgatttggtttta--aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttc 512  Q
    |||||||| ||||||| || |||||  |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  46526830 tgattttatatttgatatgattttataaaggttgttgaagtgattaaagaagtgaatttatgggctgaaaaagagacaaatggccttattagagaacttc 46526731  T
Q  513 tt 514  Q
    ||    
T  46526730 tt 46526729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 418 - 540
Target Start/End: Original strand, 51942855 - 51942977
Alignment:
Q  418 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 517  Q
    ||||||||||||| |||||||  |||||   ||||||  ||| |||| |||  |||||| |||||||||||||||||||||||||||||||||| |||||    
T  51942855 ttttaaatttgatatggttttttaggctccagaagtgcgtaaggaagtgaacatatgggttgaaaaagagacaaatggccttattaaagaacttattcct 51942954  T
Q  518 ccaagatcagttgatagcttaac 540  Q
    ||| |||||||||||||||||||    
T  51942955 ccaggatcagttgatagcttaac 51942977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 418 - 525
Target Start/End: Complemental strand, 47397722 - 47397615
Alignment:
Q  418 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 517  Q
    ||||||||||||| ||| ||||||||||| ||||||| |||||||||  |||||||||||  |||| |||||||||||  ||||||||||| || |||||    
T  47397722 ttttaaatttgatatgggtttaaaggctgatgaagtggctaaagaagtaaatttatgggccaaaaatgagacaaatggttttattaaagaaatttttcct 47397623  T
Q  518 ccaagatc 525  Q
    ||||||||    
T  47397622 ccaagatc 47397615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 45884112 - 45884024
Alignment:
Q  441 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagtt 529  Q
    |||| ||||||||||| || || | |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| | ||||||    
T  45884112 aggcggttgaagtgaccaatgacgtgaatttatgggctgaaaaagagacaaatggtcttattaaagaaattctttctccagggtcagtt 45884024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 46544183 - 46544271
Alignment:
Q  419 tttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaaga 507  Q
    |||| ||||||| | |||||||||||| |||||| ||  ||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  46544183 tttatatttgatgttgttttaaaggcttttgaagggagaaaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaaga 46544271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 46473681 - 46473754
Alignment:
Q  445 tgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 518  Q
    |||||||||||| || |||| |||  ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  46473681 tgttgaagtgaccaatgaagtgaacatatgggctgaaaaagagacaaatggtcttattaaagaaattcttcctc 46473754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 541
Target Start/End: Original strand, 46490417 - 46490557
Alignment:
Q  401 tctatttctatagttgattttaaattt-gatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggcctt 499  Q
    |||||||  ||| |||||||| ||||| ||| |||||||||||||   ||||||| | ||||||| |||||||||||||| |||| ||||||||||  ||    
T  46490417 tctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaa-agacaaatggtatt 46490515  T
Q  500 attaaagaacttcttcctccaagatcagttgatagcttaacc 541  Q
    |||||| ||||||||||| | || || ||| |||||||||||    
T  46490516 attaaacaacttcttccttccaggtcggttaatagcttaacc 46490557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 514
Target Start/End: Original strand, 45902676 - 45902775
Alignment:
Q  417 attttaaatttgatttggtttta--aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttctt 514  Q
    |||||| ||||||| ||||||||  |||| || | |||| | |||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  45902676 attttatatttgatatggttttataaaggttgattaagtaattaaaaaagtgaatttatgggctgaaaaagagacaaatggccttattaatgaatttctt 45902775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 46549370 - 46549300
Alignment:
Q  435 ttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaa 505  Q
    ||||||||||   ||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  46549370 ttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaa 46549300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 495
Target Start/End: Complemental strand, 4581808 - 4581745
Alignment:
Q  432 tggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatgg 495  Q
    ||||||||||||||   ||||||  | |||||| ||||||||||||||||||||||||||||||    
T  4581808 tggttttaaaggctaccgaagtgcttcaagaagtgaatttatgggctgaaaaagagacaaatgg 4581745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 501
Target Start/End: Original strand, 46538714 - 46538792
Alignment:
Q  424 atttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctg-aaaaagagacaaatggccttat 501  Q
    ||||||| | |||||||||||  |||||||||  ||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  46538714 atttgatattgttttaaaggcacttgaagtgagaaaagaagtgaatttgtgggctgaaaaaaaagacaaatggccttat 46538792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Complemental strand, 4614200 - 4614165
Alignment:
Q  457 taaagaagggaatttatgggctgaaaaagagacaaa 492  Q
    |||||||| |||||||||||||||||||||||||||    
T  4614200 taaagaagtgaatttatgggctgaaaaagagacaaa 4614165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 16025229 - 16025290
Alignment:
Q  441 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttatt 502  Q
    |||| ||||||||||| || || | ||||||||||||| |||| ||||||||||| ||||||    
T  16025229 aggcagttgaagtgacaaatgatgtgaatttatgggctaaaaaggagacaaatggtcttatt 16025290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 304 - 518
Target Start/End: Original strand, 35162049 - 35162264
Alignment:
Q  304 ctagcatccgattaatttagaaccataatatatgaaaattagactaacaaaatgttaatttgttctattgaaatacttccaaaaagaatttatttgttct 403  Q
    ||||||||| | |||||||  ||| | |||| |||||| ||||||| || || ||| |||| |||||||||||||||    ||||||||| |  || |||    
T  35162049 ctagcatccaactaatttaacaccgttatatttgaaaactagactagcagaaagttgatttcttctattgaaatactggtgaaaagaattcaactgatct 35162148  T
Q  404 atttctatagttgattt-taaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttatt 502  Q
    ||||  ||   |||||| |||||||||  |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35162149 atttgcattactgatttgtaaatttgacatggttttaaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagaaacaaatggccttatt 35162248  T
Q  503 aaagaacttcttcctc 518  Q
    ||||||||||||||||    
T  35162249 aaagaacttcttcctc 35162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 317 - 505
Target Start/End: Original strand, 35155038 - 35155230
Alignment:
Q  317 aatttagaaccataatatatgaaaattagactaacaaaatgttaatttgttctattgaaatacttccaaaaagaatttatttgttctatttctatagttg 416  Q
    ||||||| ||| |||| | |||||||||||||| || || ||| |||| ||||||||||||||||   || |||||| | ||| |||||| | |||  ||    
T  35155038 aatttagcaccgtaatgtgtgaaaattagactagcagaaagttgatttcttctattgaaatacttgtgaagagaattcaattgatctattgc-ataactg 35155136  T
Q  417 attt-taaatttgatt----tggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaa 505  Q
    |||| |||||||||||    ||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  35155137 atttataaatttgattgacatggttttgaaggctattgaagtgactaaagaagtgaatttatgggctaaaaaagagacaaatggccttattaaa 35155230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 15555760 - 15555825
Alignment:
Q  441 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaag 506  Q
    |||||||||||||||| || ||||  |||| ||||| |||||| ||||||||||||||||||||||    
T  15555760 aggctgttgaagtgaccaatgaagtcaattcatgggttgaaaaggagacaaatggccttattaaag 15555825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 28286990 - 28286910
Alignment:
Q  115 atcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaa-ttttatagcactaaagagaaataaa 194  Q
    |||||| ||||||| || |||||| | | |||| ||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  28286990 atcaaataaattctatgcatgtgatgtaccttttttattcaaatgcctcttcaaatttttatagtactaaagagaaataaa 28286910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 28286801 - 28286744
Alignment:
Q  426 ttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaa 483  Q
    ||||| |||||| ||||| |||||||||||| |||||||  |||||||||||||||||    
T  28286801 ttgatatggtttcaaaggttgttgaagtgacaaaagaagtaaatttatgggctgaaaa 28286744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 541
Target Start/End: Complemental strand, 9693117 - 9692995
Alignment:
Q  418 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 517  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9693117 ttttaaatttgatatg-ttttaaaggctattgaagtgactaaacaagtgaatttatgggctgaaaaagagacatatggccttattaaagaaattcttcct 9693019  T
Q  518 ccaagatcagttgatagcttaacc 541  Q
    | |   |||||||| |||||||||    
T  9693018 caagcgtcagttgacagcttaacc 9692995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 517
Target Start/End: Complemental strand, 9676199 - 9675997
Alignment:
Q  316 taatttagaaccataatatatgaaaattagactaacaaaatgttaatttgttctattgaaatacttccaaaaagaatttatttgttctatttctatagtt 415  Q
    |||||||| |||  ||||| ||||||||||||||  | || |||||| | || ||| |||||||||   ||||||||| |  || |||||||  |||  |    
T  9676199 taatttagcaccgcaatatgtgaaaattagactacgagaaagttaatctcttttatcgaaatacttgtgaaaagaattcaactgatctatttgaataact 9676100  T
Q  416 gatttt-aaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttctt 514  Q
    |||||| ||||||||| |  | || |||||| |||||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||| |||||    
T  9676099 gatttttaaatttgatattttatttaaggctattgaagtgactaaagaggtgaatttatgggctgaaaaagaaacatacggccttattaaagaaattctt 9676000  T
Q  515 cct 517  Q
    |||    
T  9675999 cct 9675997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 495
Target Start/End: Complemental strand, 21464583 - 21464513
Alignment:
Q  425 tttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatgg 495  Q
    |||||| | |||||||||||| | |||| |||  ||||||  |||||||||||||||||||||||||||||    
T  21464583 tttgatattgttttaaaggctctcgaagcgacagaagaagcaaatttatgggctgaaaaagagacaaatgg 21464513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 424 - 534
Target Start/End: Original strand, 20358860 - 20358970
Alignment:
Q  424 atttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaaga 523  Q
    |||||||  |||||| |||| |||||||||||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||    
T  20358860 atttgatgcggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcctcgagga 20358959  T
Q  524 tcagttgatag 534  Q
     ||||||||||    
T  20358960 ccagttgatag 20358970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 424 - 518
Target Start/End: Complemental strand, 20169426 - 20169332
Alignment:
Q  424 atttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 518  Q
    ||||||| ||||||| |||| |||||||||||| ||| ||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  20169426 atttgatgtggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtcggaaaaagagacaattggccttattaaagaacttcttcctc 20169332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 434 - 534
Target Start/End: Original strand, 20144358 - 20144458
Alignment:
Q  434 gttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgata 533  Q
    |||||||||| |||||||||||| ||| ||| |||| ||||| | ||||||||||||| |||||||||||||||||||||||||| | || |||||||||    
T  20144358 gttttaaaggttgttgaagtgacaaaaaaagtgaatctatggtcggaaaaagagacaattggccttattaaagaacttcttcctcgaggaccagttgata 20144457  T
Q  534 g 534  Q
    |    
T  20144458 g 20144458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 20154832 - 20154915
Alignment:
Q  111 attgatcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaattttatagcactaaagagaaataaa 194  Q
    |||||| |||||||| |  ||||||  || || |||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  20154832 attgattaaagaaatcccatgtatggcacaaaccttttttattcaaatgcctcttcaaattttatagtactaaagagaaataaa 20154915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 20144166 - 20144219
Alignment:
Q  144 ctttgttattcaaatgcctctttaaattttatagcactaaagagaaataaactt 197  Q
    |||| ||||||||||  ||||| |||||||| || |||||||||||||||||||    
T  20144166 cttttttattcaaatatctcttcaaattttacagtactaaagagaaataaactt 20144219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 548
Target Start/End: Original strand, 17708020 - 17708128
Alignment:
Q  440 aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaa 539  Q
    ||||||| ||||||||   |||||| |||||||||||||||||| |||||||| || ||||||||| | |||||||| |  || |||||||| |||||||    
T  17708020 aaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtcagttgacagcttaa 17708119  T
Q  540 cccgcctca 548  Q
    || ||||||    
T  17708120 ccagcctca 17708128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 16721916 - 16722005
Alignment:
Q  459 aagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 548  Q
    |||||| |||||| ||||||||||| |||||||| || ||||||||| | |||||||| ||  | |||||| | ||||||||||||||||    
T  16721916 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctca 16722005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 17698930 - 17699019
Alignment:
Q  459 aagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 548  Q
    |||||| |||||| ||||||||||| |||||||| || ||||||||| | |||||||| ||  | |||||| | ||||||||||||||||    
T  17698930 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctca 17699019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 515
Target Start/End: Original strand, 17717844 - 17717919
Alignment:
Q  440 aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttc 515  Q
    ||||||| ||||||||  ||||||| |||| ||||||||||||| |||||||| || ||||||||| | |||||||    
T  17717844 aaggctgatgaagtgagaaaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 17717919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 548
Target Start/End: Original strand, 17735675 - 17735782
Alignment:
Q  441 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaac 540  Q
    |||||| ||||||||  ||||||| ||||||||||||| | || |||||||| ||  ||||||| || |||||||| |   | |||||||| ||||||||    
T  17735675 aggctgatgaagtgataaaagaagtgaatttatgggctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaac 17735774  T
Q  541 ccgcctca 548  Q
    | ||||||    
T  17735775 cagcctca 17735782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 546
Target Start/End: Original strand, 17744881 - 17744961
Alignment:
Q  466 gaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcct 546  Q
    ||||||||||||||||||  ||||||| || |||||| |||| |||||||| |   |||||||| | ||||||||| ||||    
T  17744881 gaatttatgggctgaaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaaccagcct 17744961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University