View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546-Insertion-3 (Length: 439)
Name: NF4546-Insertion-3
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546-Insertion-3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 38169549 - 38169983
Alignment:
| Q |
8 |
cttctttcacagctgccctagccaaatctttccatttcatagcattcctccttagttcctctcctttttctcccttacccatcaccacttccaaacactt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38169549 |
cttctttcacagctgccctagccaaatctttccatttcttagcattcctccttagttcctctcctttttctcccttccccatcaccacttccaaacactt |
38169648 |
T |
|
| Q |
108 |
tctaatttccccagctttcaccatcccttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatct |
207 |
Q |
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|||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169649 |
tctaatttcctcaactttcaccatcccttcctcatcatgttccatcctcaacccagtcttccacacatcttcaattaacttcgcattagtggtttgatct |
38169748 |
T |
|
| Q |
208 |
gtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169749 |
gtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcg |
38169848 |
T |
|
| Q |
308 |
acaaaacctccacctgactacaccattttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaa---cttcttc |
404 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38169849 |
acaaaacctccacctgactacaccattttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttc |
38169948 |
T |
|
| Q |
405 |
tttttgttgttgtaattttttatctctaataaccc |
439 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
38169949 |
tttttgttgttgtaattttttatctctaataaccc |
38169983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 390
Target Start/End: Original strand, 38179363 - 38179745
Alignment:
| Q |
8 |
cttctttcacagctgccctagccaaatctttccatttcatagcattcctccttagttcctctcctttttctcccttacccatcaccacttccaaacactt |
107 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
38179363 |
cttctttcacagctgccctagctaaatctttccatttcatagcattcctccttagttcctctcccttttctcccttccccatcaccacttcaaaacactt |
38179462 |
T |
|
| Q |
108 |
tctaatttccccagctttcaccatcccttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatct |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38179463 |
tctaatttcctcagctttcaccatcccttcctcatcacattccatcctcaccccagtcttccacacatcttcaattaactttgcattagtggtttgatct |
38179562 |
T |
|
| Q |
208 |
gtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38179563 |
gtccactgaggaaatgcaaccataggaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcg |
38179662 |
T |
|
| Q |
308 |
acaaaacctccacctgactacaccattttattatcttcccattcatattattctcaagttcctctctacaactcagctcatca |
390 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||| | ||| ||||||| |||||||||||||| | ||||||| |
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| T |
38179663 |
acaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatca |
38179745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 390
Target Start/End: Original strand, 38184029 - 38184414
Alignment:
| Q |
8 |
cttctttcacagctgccctagccaaatctttccatttcatagcattcctccttagttcctctcctttttctcccttacccatcaccacttccaaacactt |
107 |
Q |
| |
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|||| |||| |||| | ||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38184029 |
cttccttcatagcttcactagccaaactcttccatttcttagcattccttctaagttcctctcctttttctcccttccccatcaccacttccaaacactt |
38184128 |
T |
|
| Q |
108 |
tctaatttccccagctttcaccatccct---tcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttga |
204 |
Q |
| |
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||||||||||||||||||| || ||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| |||||| |
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| T |
38184129 |
cataatttccccagctttcactatacctgcttcctcatcacgttccaccctcaacccagtcttccacaaatcttcaattaactttgcattagtagtttga |
38184228 |
T |
|
| Q |
205 |
tctgtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggt |
304 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184229 |
tctgtccactggggaaatgctaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggt |
38184328 |
T |
|
| Q |
305 |
gcgacaaaacctccacctgactacaccattttattatcttcccattcatattattctcaagttcctctctacaactcagctcatca |
390 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||||||| | ||| |||||||||||||||||||||| | ||||||| |
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| T |
38184329 |
gcgacaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatca |
38184414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 296
Target Start/End: Complemental strand, 35060987 - 35060845
Alignment:
| Q |
154 |
ctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccataggaacccctgaacccaaacttt |
253 |
Q |
| |
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|||||||| ||||||||||||||||||||| || |||||||| ||||||| ||||| ||||||||||| || | |||||||| || ||||||||| |
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| T |
35060987 |
ctcacccctatcttccacacatcttcaattagttttgcattagtcttttgatcagtccattgaggaaatgccactagtggaaccccagataccaaacttt |
35060888 |
T |
|
| Q |
254 |
ccaaagtcgaattccatccacaatgcgtcataaaacaacccaa |
296 |
Q |
| |
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|||||||||| ||||| |||||||| |||| |||||||||||| |
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| T |
35060887 |
ccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaa |
35060845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 35054239 - 35054107
Alignment:
| Q |
164 |
tcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcga |
263 |
Q |
| |
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||||||||||||||||||||||||| |||||||| | ||||||||||| || ||||| || ||||||||||||||| |||| ||||||||||| || |
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| T |
35054239 |
tcttccacacatcttcaattaactttgcattagtcatctgatctgtccattgtggaaacgccaccataggaaccccttttaccaagctttccaaagttga |
35054140 |
T |
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| Q |
264 |
attccatccacaatgcgtcataaaacaacccaa |
296 |
Q |
| |
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|||||| ||||| || |||| |||||||||||| |
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| T |
35054139 |
attccaaccacagtgtgtcaaaaaacaacccaa |
35054107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 35061110 - 35061031
Alignment:
| Q |
37 |
ttccatttcatagcattcctccttagttcctctcctttttctcccttacccatcaccacttccaaacactttctaatttc |
116 |
Q |
| |
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||||||||||| |||||| | || | |||||||||||| ||||| | ||||||||| |||||||||||||| ||||||| |
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|
| T |
35061110 |
ttccatttcattgcattctttctcaattcctctcctttctctcctcttcccatcacctcttccaaacactttttaatttc |
35061031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 35054401 - 35054293
Alignment:
| Q |
8 |
cttctttcacagctgccctagccaaatctttccatttcatagcattcctccttagttcctctcctttttctcccttacccatcaccacttccaaacactt |
107 |
Q |
| |
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|||| ||||| ||| | |||||||| || ||||||||| | || |||| || | |||||||||||| ||||| | ||||||||||| ||||||||| | |
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| T |
35054401 |
cttccttcactgcttctctagccaactccttccatttctttccactccttctcaattcctctcctttctctccactccccatcaccacctccaaacacct |
35054302 |
T |
|
| Q |
108 |
tctaatttc |
116 |
Q |
| |
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|||||||| |
|
|
| T |
35054301 |
cctaatttc |
35054293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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