View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4546_high_16 (Length: 251)
Name: NF4546_high_16
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3968487 - 3968698
Alignment:
| Q |
1 |
tagtatctgagtttgttgaccttctataaaaagttcaaaggatcacacataacaatgttgagtcacctagatctatgattttagaattaaaatgattgat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
3968487 |
tagtatctgagtttgttaaccttctataaaaagttcaaaggatcacgcataacaatgttgagtcacctagatctatgattttggaattaaaaggattgat |
3968586 |
T |
|
| Q |
101 |
tttgtcatccataaaggattaacagcacaactcaacccaaaatttaaatcttgccaattatgagtttgtatgttgtttagcgccaacacctttaatcaca |
200 |
Q |
| |
|
|||||||| || ||||||||| ||| || ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3968587 |
tttgtcattcaaaaaggattagcag--cagctcaacccaaaatttgaatcttaccaattatgagtttgtatgttgtttagcgccaacacctttaatcaca |
3968684 |
T |
|
| Q |
201 |
tgaaattatattca |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3968685 |
tgaaattatattca |
3968698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 10950740 - 10950785
Alignment:
| Q |
13 |
ttgttgaccttctataaaaagttcaaaggatcacacataacaatgt |
58 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| |||||||||| |
|
|
| T |
10950740 |
ttgttgaccttctacataaagttcaaagggtcacatataacaatgt |
10950785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 10958745 - 10958790
Alignment:
| Q |
13 |
ttgttgaccttctataaaaagttcaaaggatcacacataacaatgt |
58 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| |||||||||| |
|
|
| T |
10958745 |
ttgttgaccttctacataaagttcaaagggtcacatataacaatgt |
10958790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University