View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_high_2 (Length: 487)
Name: NF4546_high_2
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 51913202 - 51912752
Alignment:
| Q |
19 |
acctagcaggctatgacataacataattctatgcaccaagtacgattagattatgttttaaaattgtgtcaaatttttattctacaatttccaagtttac |
118 |
Q |
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| T |
51913202 |
acctagcaggctatgacataacataattctatgcaccaagtacgattagagtatgttttagaattgtgtcaaatttttattctacaatttccaagtttac |
51913103 |
T |
|
| Q |
119 |
actagaaaatttaagcgtgcaaattcatgaaaggaagagatgaacgtaacttgagtcagttttggtttccaatattgagcacacccatgtgtgaattatt |
218 |
Q |
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| T |
51913102 |
actagaaaatttaagcgtgcaaattcatgaaaggaagagatgaacgtaacttgagttagttttggtttccaatattgagcacacccatgtgtgaattatt |
51913003 |
T |
|
| Q |
219 |
tctttcttttccttctgtttcgtacacgcgtgcagtaaacc-aggggaaaaagcaaaagaagaaactactgtatagtagcaacttctaccgcagtacatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51913002 |
tctttcttttccttctgtttcgtacacgcgtgcagtaaaccaaggggaaaaagcaaaagaagaaactactgtatagtagcaacttctaccgcagtacatc |
51912903 |
T |
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| Q |
318 |
atcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912902 |
atcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattgg |
51912803 |
T |
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| Q |
418 |
tgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctc |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912802 |
tgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctc |
51912752 |
T |
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