View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_high_3 (Length: 456)
Name: NF4546_high_3
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 2293115 - 2293545
Alignment:
| Q |
18 |
caaatctctcgaaaatccctctcgctcgttcaatctcattatatctcagctcaaattttatataagatagccatccttgctgatccggcatccatttcat |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293115 |
caaatctctcgaaaatccctctagctcgttcaatctcattatatctcagctcaaattttatataagatagccatccttgctgatccggcatccatttcat |
2293214 |
T |
|
| Q |
118 |
ccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatccactcgtggcaaaagagta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293215 |
ccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatccactcgtggcaaaagagta |
2293314 |
T |
|
| Q |
218 |
acagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctcaacttcagcatacttcaaccacaaagtatgattcttataatcaactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293315 |
acagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctcaacttcagcatacttcaaccacaaagtatgattcttataatcaactt |
2293414 |
T |
|
| Q |
318 |
ccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatctttctgcgactcttcccactgtgcatacttaatccaaacactgacattccaccgaactct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293415 |
ccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatctttctgcgactcttcccactgtgcatacttaatccaaacactgacattccaccgaactct |
2293514 |
T |
|
| Q |
418 |
ccggattaaatcctcgaattcctttcttttc |
448 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
2293515 |
ccggattaaatcctcgaattcctttcttttc |
2293545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 34788082 - 34787652
Alignment:
| Q |
18 |
caaatctctcgaaaatccctctcgctcgttcaatctcattatatctcagctcaaattttatataagatagccatccttgctgatccggcatccatttcat |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
34788082 |
caaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccacttcat |
34787983 |
T |
|
| Q |
118 |
ccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatccactcgtggcaaaagagta |
217 |
Q |
| |
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||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
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|
| T |
34787982 |
ccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaagagta |
34787883 |
T |
|
| Q |
218 |
acagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctcaacttcagcatacttcaaccacaaagtatgattcttataatcaactt |
317 |
Q |
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|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787882 |
accgcgcgatcccaaacattccgagcatgattaataaacttattcttcatctcaacttgagcatacttcaaccacaaagtatgattcttataatcaactt |
34787783 |
T |
|
| Q |
318 |
ccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatctttctgcgactcttcccactgtgcatacttaatccaaacactgacattccaccgaactct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
34787782 |
ccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcg |
34787683 |
T |
|
| Q |
418 |
ccggattaaatcctcgaattcctttcttttc |
448 |
Q |
| |
|
||| |||||||||||||||||||||| |||| |
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|
| T |
34787682 |
ccgaattaaatcctcgaattcctttcgtttc |
34787652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 393
Target Start/End: Original strand, 33635822 - 33636149
Alignment:
| Q |
72 |
attttatataagatagccatccttgctgatccggcatccatttcatccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccat |
171 |
Q |
| |
|
||||||| ||||| |||||| | |||||||| |||||||||| |||||| ||||| ||||||| ||| | || || ||||||||||| |||| |||||| |
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| T |
33635822 |
attttatgtaagagagccatgcatgctgatcaggcatccattccatccacctctcgaaaacctctctaactccggcgacattgccaagaatcttctccat |
33635921 |
T |
|
| Q |
172 |
atgaatatacttataccacaactgatccactcgtggcaaaagagtaacagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctca |
271 |
Q |
| |
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||| || |||| ||||||||| |||| || || || |||||| ||||||||||||| |||||||||| ||||| || | || |||||||||||||| |
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| T |
33635922 |
atgtatgtactcataccacaattgatggacccgcggtaaaagaataacagcgcgatcgtaaacattccttgcatgattgacgaatctattcttcatctca |
33636021 |
T |
|
| Q |
272 |
acttcagcatacttcaaccacaaagtatgattcttataatcaac------ttccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatctttctgcg |
365 |
Q |
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| ||||| || || ||||| | |||||| || || || | ||| ||| | |||| ||||||||| ||||||||||| | | |||||||| | |
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| T |
33636022 |
aactcagcgtattttaaccatagagtatggtttttgtagtgaacttgttgttctagggctctttcccaaacggaacgtgcacgattgacgtctttctgtg |
33636121 |
T |
|
| Q |
366 |
actcttcccactgtgcatacttaatcca |
393 |
Q |
| |
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|||||||||| |||||||| |||||||| |
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|
| T |
33636122 |
actcttcccaatgtgcatatttaatcca |
33636149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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