View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_high_4 (Length: 403)
Name: NF4546_high_4
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 43616695 - 43617074
Alignment:
| Q |
7 |
tggacatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtgg |
106 |
Q |
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| T |
43616695 |
tggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtgg |
43616794 |
T |
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| Q |
107 |
agcttgtggcttgtacttcaggtaccattaatttaatttcaatttgcggtataaggtctagaatgatgaaaacatttgtgttacattatgaattctctgc |
206 |
Q |
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| T |
43616795 |
agcttgtggcttgtacttcaggtaccattaatttaatttcaatttgtggtataaggtctagaatgatgaaaacatttgtgttacattatgaattctctgc |
43616894 |
T |
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| Q |
207 |
gttatcgataannnnnnnaacaaaatttagtgaacagaaaaataattattaattgaagtgagagtaatgacaattttacaacatgaaatttgaatttctt |
306 |
Q |
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| T |
43616895 |
gtcatggataatttttttaacaaaatttagtgaacagaaaaataattattaattgaagtgagagtaatgacaattttacaacatgaaatttgaatttctt |
43616994 |
T |
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| Q |
307 |
ttcctaaaggttacaatgtcaaattctcacaactaagctaacaccaaaccttttgaataaaaataggctcagttacttaa |
386 |
Q |
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| T |
43616995 |
ttcctaaaggttacaatgtcaaattctcacaactaagctaacaccaaaccttttgaataaaaataggctcagttacttaa |
43617074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 43610070 - 43610206
Alignment:
| Q |
7 |
tggacatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtgg |
106 |
Q |
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| T |
43610070 |
tggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacaaaaaatggattttgggttctttactcttgttcctaactaccattacctgg |
43610169 |
T |
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| Q |
107 |
agcttgtggcttgtacttcaggtaccattaatttaatt |
144 |
Q |
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| T |
43610170 |
agtttgtggattgtacttcaggtagca-taatttaatt |
43610206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 43603661 - 43603798
Alignment:
| Q |
7 |
tggacatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtgg |
106 |
Q |
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|||| ||||||||||| ||||| ||||| || || ||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||| |||||||| |
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| T |
43603661 |
tggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtgg |
43603760 |
T |
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| Q |
107 |
agcttgtggcttgtacttcaggtaccattaatttaatt |
144 |
Q |
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| T |
43603761 |
agtttgtggattgtatttcaggtaccgtttatttaatt |
43603798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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