View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4546_low_1 (Length: 768)

Name: NF4546_low_1
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4546_low_1
NF4546_low_1
[»] chr8 (6 HSPs)
chr8 (545-749)||(11758968-11759172)
chr8 (234-422)||(11758655-11758840)
chr8 (104-228)||(11758438-11758562)
chr8 (607-645)||(10320501-10320539)
chr8 (607-645)||(19701362-19701400)
chr8 (612-649)||(17521282-17521319)
[»] chr7 (8 HSPs)
chr7 (601-645)||(1438117-1438161)
chr7 (597-640)||(41244932-41244975)
chr7 (607-649)||(8227354-8227396)
chr7 (607-645)||(37451255-37451293)
chr7 (602-645)||(27383733-27383776)
chr7 (594-645)||(34000254-34000305)
chr7 (600-642)||(30844397-30844439)
chr7 (608-642)||(34568354-34568388)
[»] chr4 (11 HSPs)
chr4 (599-642)||(26238599-26238642)
chr4 (608-648)||(470333-470373)
chr4 (615-649)||(49491201-49491235)
chr4 (602-645)||(12263252-12263295)
chr4 (607-642)||(15175146-15175181)
chr4 (603-645)||(49878194-49878236)
chr4 (600-645)||(18004463-18004508)
chr4 (593-642)||(20921863-20921912)
chr4 (607-648)||(32006505-32006546)
chr4 (600-645)||(50650945-50650990)
chr4 (612-649)||(54151639-54151676)
[»] chr3 (5 HSPs)
chr3 (602-646)||(35208854-35208898)
chr3 (601-645)||(43108061-43108105)
chr3 (593-645)||(47440741-47440793)
chr3 (605-638)||(50542121-50542154)
chr3 (612-645)||(53221968-53222001)
[»] chr5 (4 HSPs)
chr5 (607-649)||(33753978-33754020)
chr5 (612-642)||(3671228-3671258)
chr5 (607-649)||(33849609-33849651)
chr5 (612-645)||(42964519-42964552)
[»] chr6 (2 HSPs)
chr6 (602-643)||(3654964-3655005)
chr6 (607-646)||(33608342-33608381)
[»] chr2 (8 HSPs)
chr2 (608-649)||(29350059-29350100)
chr2 (601-641)||(35234161-35234201)
chr2 (608-648)||(36547250-36547290)
chr2 (607-642)||(21482540-21482575)
chr2 (600-638)||(28163925-28163963)
chr2 (608-645)||(12893262-12893299)
chr2 (601-642)||(14925253-14925294)
chr2 (600-645)||(20644002-20644047)
[»] chr1 (5 HSPs)
chr1 (608-648)||(3736630-3736670)
chr1 (608-642)||(10843342-10843376)
chr1 (608-642)||(13794529-13794563)
chr1 (607-645)||(33577934-33577972)
chr1 (608-645)||(22021425-22021462)
[»] scaffold0083 (1 HSPs)
scaffold0083 (592-642)||(45933-45983)
[»] scaffold1327 (1 HSPs)
scaffold1327 (608-645)||(562-599)
[»] scaffold0426 (1 HSPs)
scaffold0426 (608-645)||(5858-5895)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 545 - 749
Target Start/End: Original strand, 11758968 - 11759172
Alignment:
Q  545 tcgaggacgagctgacgcctaaggcatcaactatcaaaacatgattcaattgtctccgtaaatttagctcagttgataaggataatgtataatatatgta 644  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  11758968 tcgaggacgagctaacgcctaaggcatcaactatcaaaacatgattcaattgtctccgtaaacttagctcagttgataaggataatgtataatatatgca 11759067  T
Q  645 aagtcaatccatatacttgttaacttctctaaaaatatgatgaaaagcaatcacccaatgtaagttgtggaatcgcctaacctcttgatgagaggagcat 744  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  11759068 aagtcgatccatatatttgttaacttttctaaaaatatgatgaaaagcaatcacccaatgtaagttgtggaattgcctaaccttttgatgagaggagcat 11759167  T
Q  745 aagag 749  Q
    |||||    
T  11759168 aagag 11759172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 234 - 422
Target Start/End: Original strand, 11758655 - 11758840
Alignment:
Q  234 gtgtacatatgctttagttaatcttgaatgtgctttaagtgggtttagaccctcgttagcttgctagaatatcatcgannnnnnnnnncttctattaatt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||    
T  11758655 gtgtacatatgctttagttaatcttgaatgtgctttaagtgggtttagacccttgttagcttgctagaatatcatcgattttttt---cttctattaatt 11758751  T
Q  334 gatgactccttgtttaattgctatatttagcattcttttcgtgggtttagaccctcttttatccccccataaagaacttgacgccataa 422  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  11758752 gatgactccttgtttaattgctatatttagcattcttttcctgggtttagaccctcttttatccccccataaaaaacttgacgccataa 11758840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 11758438 - 11758562
Alignment:
Q  104 ctttttatttggggttctgaattttacttattgaaattaaactttattgggtggtttaagaaatgaaggttgttgtacttggaacaaggtggattggaca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11758438 ctttttatttggggttctgaattttacttattgaaattaaactttattgggcggtttaagaaatgaaggttgttgtacttggaacaaggtggattggaca 11758537  T
Q  204 gtctcctttgcgagcaatgcttgtg 228  Q
    ||||| |||||||||||||||||||    
T  11758538 gtctcttttgcgagcaatgcttgtg 11758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 645
Target Start/End: Original strand, 10320501 - 10320539
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  10320501 tttagctcagttgataagaataatgcataatatatgtaa 10320539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 645
Target Start/End: Complemental strand, 19701400 - 19701362
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  19701400 tttaactcagttgataaggataatgcataatatatgtaa 19701362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 649
Target Start/End: Complemental strand, 17521319 - 17521282
Alignment:
Q  612 ctcagttgataaggataatgtataatatatgtaaagtc 649  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  17521319 ctcagttgataaggacaatgtataatatatataaagtc 17521282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 601 - 645
Target Start/End: Complemental strand, 1438161 - 1438117
Alignment:
Q  601 cgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  1438161 cgtaaatttagctcagttgataaggataatgtataatagatgtaa 1438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 640
Target Start/End: Original strand, 41244932 - 41244975
Alignment:
Q  597 tctccgtaaatttagctcagttgataaggataatgtataatata 640  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  41244932 tctccgtaaatttagctcagttgataaagataatgtataatata 41244975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 649
Target Start/End: Original strand, 8227354 - 8227396
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaaagtc 649  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  8227354 tttagctcagttgataaggacaatgcataatatatgtaaagtc 8227396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 645
Target Start/End: Complemental strand, 37451293 - 37451255
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  37451293 tttagctcagttgataaggataatgcataatatatgtaa 37451255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 645
Target Start/End: Original strand, 27383733 - 27383776
Alignment:
Q  602 gtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||    
T  27383733 gtaaatttagctcagttggtaaggacaatgtataaaatatgtaa 27383776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 645
Target Start/End: Original strand, 34000254 - 34000305
Alignment:
Q  594 ttgtctccgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||||||||| |  ||| |||||||||||||||||||| |||||||||||||    
T  34000254 ttgtctccgtgagcttaactcagttgataaggataatgcataatatatgtaa 34000305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 642
Target Start/End: Complemental strand, 30844439 - 30844397
Alignment:
Q  600 ccgtaaatttagctcagttgataaggataatgtataatatatg 642  Q
    |||| ||||||||||||||| |||||||||| |||||||||||    
T  30844439 ccgtgaatttagctcagttggtaaggataatatataatatatg 30844397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 642
Target Start/End: Complemental strand, 34568388 - 34568354
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||||||||||||||||||| ||||||||||    
T  34568388 ttagctcagttgataaggataatgcataatatatg 34568354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 642
Target Start/End: Complemental strand, 26238642 - 26238599
Alignment:
Q  599 tccgtaaatttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  26238642 tccgtaaatttagctcagttgataagaataatgtataatatatg 26238599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 648
Target Start/End: Complemental strand, 470373 - 470333
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaaagt 648  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  470373 ttagctcagttgataaagataatgtataatatatgtaaagt 470333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 649
Target Start/End: Original strand, 49491201 - 49491235
Alignment:
Q  615 agttgataaggataatgtataatatatgtaaagtc 649  Q
    |||||||||||||||||||||||||||||||||||    
T  49491201 agttgataaggataatgtataatatatgtaaagtc 49491235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 645
Target Start/End: Original strand, 12263252 - 12263295
Alignment:
Q  602 gtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||    
T  12263252 gtaagtttagctcagttgacaaggacaatgtataatatatgtaa 12263295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 642
Target Start/End: Original strand, 15175146 - 15175181
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||||||||||||| |||||||||||||||||    
T  15175146 tttagctcagttgataagaataatgtataatatatg 15175181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 49878194 - 49878236
Alignment:
Q  603 taaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||||||||||| || |||||| |||||||||||    
T  49878194 taaatttagctcagttgataaagacaatgtaaaatatatgtaa 49878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 645
Target Start/End: Original strand, 18004463 - 18004508
Alignment:
Q  600 ccgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||| ||||||||||||||| |||| |||||| |||||||||||||    
T  18004463 ccgtgaatttagctcagttggtaagaataatgcataatatatgtaa 18004508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 642
Target Start/End: Complemental strand, 20921912 - 20921863
Alignment:
Q  593 attgtctccgtaaatttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||| || | |||||||||||||  |||||||||||||||||||||    
T  20921912 attgtctctgtgagtttagctcagttggcaaggataatgtataatatatg 20921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 648
Target Start/End: Original strand, 32006505 - 32006546
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaaagt 648  Q
    ||||||||||||| || |||||||| ||||||||||||||||    
T  32006505 tttagctcagttggtagggataatgcataatatatgtaaagt 32006546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 645
Target Start/End: Complemental strand, 50650990 - 50650945
Alignment:
Q  600 ccgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||| ||||||| ||||||||||| |||| |||||||||||||    
T  50650990 ccgtaaacttagctcggttgataaggacaatgcataatatatgtaa 50650945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 649
Target Start/End: Complemental strand, 54151676 - 54151639
Alignment:
Q  612 ctcagttgataaggataatgtataatatatgtaaagtc 649  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  54151676 ctcagttggtaaggataatgtataatatatgcaaagtc 54151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 646
Target Start/End: Complemental strand, 35208898 - 35208854
Alignment:
Q  602 gtaaatttagctcagttgataaggataatgtataatatatgtaaa 646  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  35208898 gtaaatttagctcagttggtaagaataatgtataatatatgtaaa 35208854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 645
Target Start/End: Complemental strand, 43108105 - 43108061
Alignment:
Q  601 cgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||    
T  43108105 cgtaaacttaactcagttgataaggataatgtataatataagtaa 43108061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 645
Target Start/End: Original strand, 47440741 - 47440793
Alignment:
Q  593 attgtctccgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||| ||| || ||||||||||||||||||| ||| ||||||||||||||    
T  47440741 attgtcttcgtgaacttagctcagttgataaggacaatatataatatatgtaa 47440793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 638
Target Start/End: Original strand, 50542121 - 50542154
Alignment:
Q  605 aatttagctcagttgataaggataatgtataata 638  Q
    |||||||||||||||||||||||| |||||||||    
T  50542121 aatttagctcagttgataaggatattgtataata 50542154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 645
Target Start/End: Original strand, 53221968 - 53222001
Alignment:
Q  612 ctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||||| ||||||||||||||||||    
T  53221968 ctcagttgataaggacaatgtataatatatgtaa 53222001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 649
Target Start/End: Complemental strand, 33754020 - 33753978
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaaagtc 649  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  33754020 tttagctcagttgataaagacaatgtataatatatgtaaagtc 33753978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 642
Target Start/End: Original strand, 3671228 - 3671258
Alignment:
Q  612 ctcagttgataaggataatgtataatatatg 642  Q
    |||||||||||||||||||||||||||||||    
T  3671228 ctcagttgataaggataatgtataatatatg 3671258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 649
Target Start/End: Complemental strand, 33849651 - 33849609
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaaagtc 649  Q
    ||||||||||||||||| || |||||||| |||||||||||||    
T  33849651 tttagctcagttgataaagacaatgtatactatatgtaaagtc 33849609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 645
Target Start/End: Original strand, 42964519 - 42964552
Alignment:
Q  612 ctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||||| ||||||||||||||||||    
T  42964519 ctcagttgataaggacaatgtataatatatgtaa 42964552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 643
Target Start/End: Original strand, 3654964 - 3655005
Alignment:
Q  602 gtaaatttagctcagttgataaggataatgtataatatatgt 643  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  3654964 gtaaacttaggtcagttgataaggataatgtataatatatgt 3655005  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 646
Target Start/End: Original strand, 33608342 - 33608381
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaaa 646  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  33608342 tttatctcagttgataaggacaatgtataatatatgtaaa 33608381  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 649
Target Start/End: Complemental strand, 29350100 - 29350059
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaaagtc 649  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  29350100 ttagctcagttgttaaggataatgcataatatatgtaaagtc 29350059  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 641
Target Start/End: Complemental strand, 35234201 - 35234161
Alignment:
Q  601 cgtaaatttagctcagttgataaggataatgtataatatat 641  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  35234201 cgtaactttagctcagttgatagggataatgtataatatat 35234161  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 648
Target Start/End: Complemental strand, 36547290 - 36547250
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaaagt 648  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  36547290 ttagctcagttggtaaggataatgtataatatatgcaaagt 36547250  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 642
Target Start/End: Complemental strand, 21482575 - 21482540
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatg 642  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21482575 tttagctcagttggtaaggataatgtataatatatg 21482540  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 638
Target Start/End: Original strand, 28163925 - 28163963
Alignment:
Q  600 ccgtaaatttagctcagttgataaggataatgtataata 638  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  28163925 ccgtaaatttagctcagttgataaggacaatgcataata 28163963  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 645
Target Start/End: Complemental strand, 12893299 - 12893262
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  12893299 ttagctcagttgataagaacaatgtataatatatgtaa 12893262  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 642
Target Start/End: Complemental strand, 14925294 - 14925253
Alignment:
Q  601 cgtaaatttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||||| |||||||| |||||| |||||||||||||||    
T  14925294 cgtaaatttaactcagttggtaaggacaatgtataatatatg 14925253  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 645
Target Start/End: Original strand, 20644002 - 20644047
Alignment:
Q  600 ccgtaaatttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||| ||||||||||||||| |||| |||||| |||||||||||||    
T  20644002 ccgtgaatttagctcagttggtaagaataatgcataatatatgtaa 20644047  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 648
Target Start/End: Original strand, 3736630 - 3736670
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaaagt 648  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  3736630 ttagctcagttagtaaggataatgtataatatatgtaaagt 3736670  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 642
Target Start/End: Complemental strand, 10843376 - 10843342
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||||||||||||||||||| ||||||||||    
T  10843376 ttagctcagttgataaggataatgcataatatatg 10843342  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 642
Target Start/End: Complemental strand, 13794563 - 13794529
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatg 642  Q
    |||||||||||||||||||||||| ||||||||||    
T  13794563 ttagctcagttgataaggataatgcataatatatg 13794529  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 645
Target Start/End: Original strand, 33577934 - 33577972
Alignment:
Q  607 tttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  33577934 tttagctcagttgctaaggacaatgtataatatatgtaa 33577972  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 645
Target Start/End: Original strand, 22021425 - 22021462
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaa 645  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  22021425 ttagctcagttgctaaggacaatgtataatatatgtaa 22021462  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 642
Target Start/End: Original strand, 45933 - 45983
Alignment:
Q  592 aattgtctccgtaaatttagctcagttgataaggataatgtataatatatg 642  Q
    ||||||| |||| || |||||||||||| |||| |||||||||||||||||    
T  45933 aattgtccccgtgaacttagctcagttggtaagaataatgtataatatatg 45983  T

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Target: scaffold1327 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 645
Target Start/End: Original strand, 562 - 599
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  562 ttagctcagttgataaggacagtgtataatatatgtaa 599  T

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Target: scaffold0426 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 645
Target Start/End: Complemental strand, 5895 - 5858
Alignment:
Q  608 ttagctcagttgataaggataatgtataatatatgtaa 645  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  5895 ttagctcagttgaaaagaataatgtataatatatgtaa 5858  T

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