View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_10 (Length: 361)
Name: NF4546_low_10
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 344
Target Start/End: Complemental strand, 25346863 - 25346542
Alignment:
| Q |
23 |
catcatctatctacaaaagacaatgaagacatagaaagtagaactctgtcgttgtctatgttgactnnnnnnnnnnnnnnnnnnnnngagaataaagtct |
122 |
Q |
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| T |
25346863 |
catcatatatctacaaaagacaatgaagacatagaaagtagaactctgtcgttgtctatgttgactaaaacaaaaacaaaaacaaaagagaataaagtct |
25346764 |
T |
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| Q |
123 |
catctgtgtctgtaatatcattttgattgcttgtttgttgtattgcatttatctccgtatatgggtttagatcaatatttcatattctcatatcctaatc |
222 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346763 |
catctatgtctgtaatatcattttgagtgcttgtttgttgtattgcatttatctccgtatatgggtttagatcaatatttcatattctcatatcctaatc |
25346664 |
T |
|
| Q |
223 |
tgtttttaaaaggtatgatgcttttccactctaaatttacattactttttaatttgttgcagtccacattaatgcaaagttggtttggctgcaatttttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346663 |
tgtttttaaaaggtatgatgcttttccactctaaatttacattactttttaatttgttgcagtccacattaatgcaaagttggtttggctgcaatttttg |
25346564 |
T |
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| Q |
323 |
aaaatcagtatgtcacttagtg |
344 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25346563 |
aaaatcagtatgtcacttagtg |
25346542 |
T |
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