View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4546_low_12 (Length: 342)

Name: NF4546_low_12
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4546_low_12
NF4546_low_12
[»] chr1 (1 HSPs)
chr1 (14-341)||(8420561-8420876)
[»] chr7 (4 HSPs)
chr7 (143-341)||(49171545-49171742)
chr7 (14-136)||(49171239-49171361)
chr7 (14-324)||(21492315-21492620)
chr7 (82-159)||(45232599-45232677)
[»] chr3 (2 HSPs)
chr3 (268-321)||(8730253-8730306)
chr3 (268-321)||(9082140-9082193)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 8420876 - 8420561
Alignment:
Q  14 agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| | ||||    
T  8420876 agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatc-------aaattattataggtagatacatatacaaataaccgtcccttttga 8420784  T
Q  114 acaaaatcagaataataaagaaatgaaatctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagggtggatt 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  8420783 acaaaatcagaataataaagaaatgaaaactaggtttattttaattgagtc----actcatagcataactataactataggaagtagttgagg-tggatt 8420689  T
Q  214 ccttatctttaggaaggcatgctaataagtaaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtca 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8420688 ccttatctttaggaaggcatgctaataagtaaacaacagcaacgtgattaataggagagtagtgttttgactcagcaacaaaaggagacactcatagtca 8420589  T
Q  314 aataagtagaaaaaattgagtagaaata 341  Q
    ||||||||||| ||||||||| ||||||    
T  8420588 aataagtagaataaattgagtggaaata 8420561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 143 - 341
Target Start/End: Original strand, 49171545 - 49171742
Alignment:
Q  143 ctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagggtggattccttatctttaggaaggcatgctaataag 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49171545 ctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagg-tggattccttatctttaggaaggcatgctaataag 49171643  T
Q  243 taaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagtagaaaaaattgagtagaaata 341  Q
    |||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  49171644 taaataagagcaacgtgactaataggagagtagtgttttaactcagcaacaaaaggagtcactcatagtcaaataagtagaataaattgagtggaaata 49171742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 49171239 - 49171361
Alignment:
Q  14 agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49171239 agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga 49171338  T
Q  114 acaaaatcagaataataaagaaa 136  Q
    |||||||||||||||||||||||    
T  49171339 acaaaatcagaataataaagaaa 49171361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 21492315 - 21492620
Alignment:
Q  14 agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga 113  Q
    |||||| ||||||||| ||| |  |||||||||||||||| ||||||||||| |||||||||||||| |||||| ||     || ||||| || ||||||    
T  21492315 agcagatagtaggaaacgttattggtctcttcctaattgtatgttatccctaggaaaattattatagctagatatatg----aaaaaccgcccctcttga 21492410  T
Q  114 acaaaa-tcagaataataaagaaatgaaatctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgag------- 205  Q
    |||||| |||||| |||||||||| |||| ||| |||||||||||||||| |    |||| |||||||||||||      ||| ||||||||            
T  21492411 acaaaaatcagaaaaataaagaaaagaaaactaagtttattttaattgagcc----actcatagcataactata------ggaggtagttgaaccatggg 21492500  T
Q  206 -ggtggattccttatctttaggaaggcatgctaataagtaaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcac 304  Q
     |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| | |||    
T  21492501 aggtggattccttatctttaggaaggcatactaataagtaaacaacagcaacgtgactaacaagagagtagtgttttgactcagcaacaaaaggggacac 21492600  T
Q  305 tcatagtcaaataagtagaa 324  Q
    |||| |||||||||||||||    
T  21492601 tcatggtcaaataagtagaa 21492620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 45232677 - 45232599
Alignment:
Q  82 tagatacatatacaaataaccgtccttcttgaacaaaatcag-aataataaagaaatgaaatctaggtttattttaatt 159  Q
    ||||||| |||| | |||||||||| |||||||||||||||| || |||||||||| |||| ||| |||| ||||||||    
T  45232677 tagatacgtatatatataaccgtccctcttgaacaaaatcagcaaaaataaagaaaagaaaactatgtttgttttaatt 45232599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 8730306 - 8730253
Alignment:
Q  268 gagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagta 321  Q
    ||||||||||||||||||||||||||||||    |||| |||||||||||||||    
T  8730306 gagagtagtgttttgactcagcaacaaaagagaacactgatagtcaaataagta 8730253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 9082193 - 9082140
Alignment:
Q  268 gagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagta 321  Q
    ||||||||||||||||||||||||||||||    |||| |||||||||||||||    
T  9082193 gagagtagtgttttgactcagcaacaaaagagaacactgatagtcaaataagta 9082140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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