View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_14 (Length: 310)
Name: NF4546_low_14
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 7047332 - 7047482
Alignment:
| Q |
5 |
actttggatgaggttaatataaaagttgaatatctatgataatttgacggttataattgattcacattctaaacattttagagttatttggtgtatatga |
104 |
Q |
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| T |
7047332 |
actttggaggaggttaatataaaagttgaatatctatgataatttgacggttataattgattcacattctaaacattttagagtcattcggtgtatatga |
7047431 |
T |
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| Q |
105 |
cataaatcctcatttttatgtgtgattaaattatttttgtccatacatata |
155 |
Q |
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| T |
7047432 |
cataaatcgtcatttttatgtgtgattaaattatttttgtccatatatata |
7047482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 7033349 - 7033448
Alignment:
| Q |
211 |
cttatttaacccaattactagtattattttaggtacta--------tactggatcatctctaatattttcctagctttggtttttgaatagggttttcat |
302 |
Q |
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| T |
7033349 |
cttatttaacccaattactactattattttaggtactagtatagtatactggatc---tctaatattttcctagctttggtttttgaatagggttttctt |
7033445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 7047883 - 7047982
Alignment:
| Q |
211 |
cttatttaacccaattactagtattattttaggtacta--------tactggatcatctctaatattttcctagctttggtttttgaatagggttttcat |
302 |
Q |
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| T |
7047883 |
cttatttaacccaattactactattattttaggtactagtatagtatactggatc---tctaatattttcctagctttggtttttgaatagggttttctt |
7047979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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