View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4546_low_15 (Length: 298)

Name: NF4546_low_15
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4546_low_15
NF4546_low_15
[»] chr7 (5 HSPs)
chr7 (63-135)||(49172351-49172423)
chr7 (157-226)||(49172282-49172351)
chr7 (17-58)||(48593579-48593620)
chr7 (156-224)||(40187634-40187703)
chr7 (263-298)||(49171708-49171743)
[»] chr1 (4 HSPs)
chr1 (263-298)||(8420560-8420595)
chr1 (154-219)||(48131231-48131297)
chr1 (155-225)||(42045369-42045440)
chr1 (156-208)||(44243867-44243920)
[»] chr5 (5 HSPs)
chr5 (154-219)||(32565516-32565582)
chr5 (155-225)||(6489000-6489071)
chr5 (155-223)||(20370130-20370198)
chr5 (163-226)||(11017177-11017241)
chr5 (155-210)||(27721687-27721743)
[»] chr2 (2 HSPs)
chr2 (158-225)||(34191305-34191373)
chr2 (155-208)||(346138-346192)
[»] chr8 (6 HSPs)
chr8 (163-209)||(41625195-41625242)
chr8 (156-224)||(11708980-11709049)
chr8 (155-219)||(27191751-27191816)
chr8 (155-219)||(39821877-39821942)
chr8 (153-200)||(33445561-33445609)
chr8 (153-208)||(33451363-33451419)
[»] scaffold0012 (1 HSPs)
scaffold0012 (154-219)||(118811-118877)
[»] chr6 (2 HSPs)
chr6 (154-192)||(11129641-11129679)
chr6 (163-210)||(30639438-30639486)
[»] chr4 (3 HSPs)
chr4 (156-225)||(13121538-13121608)
chr4 (155-224)||(22164267-22164337)
chr4 (163-210)||(50442759-50442807)
[»] chr3 (3 HSPs)
chr3 (156-210)||(20949933-20949986)
chr3 (157-226)||(37920994-37921064)
chr3 (156-224)||(48315022-48315091)
[»] scaffold0445 (1 HSPs)
scaffold0445 (163-226)||(4471-4535)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 49172423 - 49172351
Alignment:
Q  63 gaattctaattttatcttgacaatgcacgtgaatatacattctaagacgatgcacatgaaccacttcttatat 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49172423 gaattctaattttatcttgacaatgcacgtgaatatacattctaagacgatgcacatgaaccacttcttatat 49172351  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 49172351 - 49172282
Alignment:
Q  157 tcctcatgagcttagctcagttggcaggaataatgctaatatatgtaaggtctgcagttcaaatcccgga 226  Q
    ||||| |||||||||||||||||  ||| | |||||||||||||||||||||||||||| ||||||||||    
T  49172351 tcctcgtgagcttagctcagttgatagggacaatgctaatatatgtaaggtctgcagtttaaatcccgga 49172282  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 48593620 - 48593579
Alignment:
Q  17 gaatattccataaatctctgttctctttgtttctatgacttt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48593620 gaatattccataaatctctgttctctttgtttctatgacttt 48593579  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 40187703 - 40187634
Alignment:
Q  156 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 224  Q
    ||||||||||||||| ||||||||| ||| | ||||| ||||||||||||||||||| ||||||| ||||    
T  40187703 gtcctcatgagcttaactcagttggtagggacaatgcataatatatgtaaggtctgcggttcaaaccccg 40187634  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 49171708 - 49171743
Alignment:
Q  263 atagtcaaataagtagaataaattgagtggaaatag 298  Q
    ||||||||||||||||||||||||||||||||||||    
T  49171708 atagtcaaataagtagaataaattgagtggaaatag 49171743  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 8420595 - 8420560
Alignment:
Q  263 atagtcaaataagtagaataaattgagtggaaatag 298  Q
    ||||||||||||||||||||||||||||||||||||    
T  8420595 atagtcaaataagtagaataaattgagtggaaatag 8420560  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 48131297 - 48131231
Alignment:
Q  154 ttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 219  Q
    |||||||| |||| ||| ||||||||||||  ||||||| |||||||||||||||||| ||||||||    
T  48131297 ttgtcctcgtgagtttaactcagttggcagagataatgcataatatatgtaaggtctggagttcaaa 48131231  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 42045440 - 42045369
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 225  Q
    ||||||| |||||||||||||||||| | | | ||||| ||||||||| |||||||| |||||||| |||||    
T  42045440 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggagttcaaaccccgg 42045369  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 44243867 - 44243920
Alignment:
Q  156 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtc 208  Q
    |||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||    
T  44243867 gtcctcgtgagtttagctcagttggtaggaacaatgcataatatatgtaaggtc 44243920  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 32565516 - 32565582
Alignment:
Q  154 ttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 219  Q
    |||||||| |||||||||||||| ||| ||| ||||||| |||||||||||||||| | ||||||||    
T  32565516 ttgtcctcgtgagcttagctcagctggtagggataatgcataatatatgtaaggtccgaagttcaaa 32565582  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 6489000 - 6489071
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 225  Q
    ||||||| |||||||||||||||||| ||| | ||||| ||||||||| ||||||||  ||||||| |||||    
T  6489000 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccgg 6489071  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 20370198 - 20370130
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatccc 223  Q
    ||||||| |||||||||||||||||| ||| ||||||| ||||||||  ||||| || ||||||||||||    
T  20370198 tgtcctcgtgagcttagctcagttggtagggataatgcataatatatacaaggtttg-agttcaaatccc 20370130  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 11017177 - 11017241
Alignment:
Q  163 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgga 226  Q
    |||| ||||||||||||| ||| ||||||| ||||||||| ||||||||  |||| |||||||||    
T  11017177 tgagtttagctcagttggtagggataatgcataatatatgcaaggtctgaggttcgaatcccgga 11017241  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 27721743 - 27721687
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctg 210  Q
    ||||||| |||||||||||||||||| ||||| ||||| ||||||||| || |||||    
T  27721743 tgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatgcaaagtctg 27721687  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 34191373 - 34191305
Alignment:
Q  158 cctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 225  Q
    ||||||||||||||||||||||| ||| | ||||| |||||||||||| ||||   |||||||||||||    
T  34191373 cctcatgagcttagctcagttggtagggacaatgcataatatatgtaaagtctaaggttcaaatcccgg 34191305  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 346192 - 346138
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtc 208  Q
    ||||||| ||||||||||||||||||   ||||||||| ||||||||||||||||    
T  346192 tgtcctcgtgagcttagctcagttggtttgaataatgcataatatatgtaaggtc 346138  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 41625195 - 41625242
Alignment:
Q  163 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtct 209  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||    
T  41625195 tgagcttagctcagttggtatgaataatgcataatatatgtaaggtct 41625242  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 11708980 - 11709049
Alignment:
Q  156 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 224  Q
    |||||| |||||||||||||||||| ||| | ||||| ||||||||| |||||| | |||||||| ||||    
T  11708980 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccg 11709049  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 27191751 - 27191816
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 219  Q
    ||||||| |||||||||||||||||| | ||| ||| | ||||||||| |||||||| ||||||||    
T  27191751 tgtcctcgtgagcttagctcagttggtaagaacaattcataatatatgcaaggtctgaagttcaaa 27191816  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 39821877 - 39821942
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 219  Q
    ||||||| |||||||||||||||||| ||| | ||||| ||||||||| ||||||||  |||||||    
T  39821877 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaa 39821942  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 33445561 - 33445609
Alignment:
Q  153 gttgtcctcatgagcttagctcagttggcaggaataatgc-taatatat 200  Q
    ||||||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  33445561 gttgtcctcgtgagcttagctcagttggtaggaacaatgcataatatat 33445609  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 33451419 - 33451363
Alignment:
Q  153 gttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtc 208  Q
    ||||||||| |||||||||||||||||| | | ||||||| ||||||||| ||||||    
T  33451419 gttgtcctcgtgagcttagctcagttggtatggataatgcataatatatgcaaggtc 33451363  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 118811 - 118877
Alignment:
Q  154 ttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 219  Q
    |||||||| ||||||||||||||||||   ||| ||||| ||| |||||||||||||| ||||||||    
T  118811 ttgtcctcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaaggtctggagttcaaa 118877  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 11129679 - 11129641
Alignment:
Q  154 ttgtcctcatgagcttagctcagttggcaggaataatgc 192  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  11129679 ttgtcctcatgagcttagctcagttggtaggaacaatgc 11129641  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 30639486 - 30639438
Alignment:
Q  163 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctg 210  Q
    |||| ||||||||||||| ||||||||||| ||||||||| ||||||||    
T  30639486 tgagtttagctcagttggtaggaataatgcataatatatgcaaggtctg 30639438  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 13121538 - 13121608
Alignment:
Q  156 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 225  Q
    |||||| ||||||||||| |||||| ||| | ||||| ||||||||| |||||||| |||||||| |||||    
T  13121538 gtcctcgtgagcttagcttagttggtagggacaatgcataatatatgcaaggtctgaagttcaaaccccgg 13121608  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 22164337 - 22164267
Alignment:
Q  155 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 224  Q
    ||||||| |||| |||||| |||||| ||||| ||||| ||||||||||||||||||  ||||||| ||||    
T  22164337 tgtcctcgtgagtttagcttagttggtaggaacaatgcataatatatgtaaggtctggggttcaaaccccg 22164267  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 50442807 - 50442759
Alignment:
Q  163 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctg 210  Q
    |||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  50442807 tgagcttagctcagttggtagggataatgcataatatatgcaaggtctg 50442759  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 20949933 - 20949986
Alignment:
Q  156 gtcctcatgagcttagctcagttggcaggaataatgctaatatatgtaaggtctg 210  Q
    ||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||    
T  20949933 gtcctcatgagcttagctcagatggtatgaacaatgc-aatatatgtaaggtctg 20949986  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 37921064 - 37920994
Alignment:
Q  157 tcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgga 226  Q
    ||||| |||| ||||||||||||  ||| ||||||| ||||||||| || |||||| ||||||||||||||    
T  37921064 tcctcgtgagtttagctcagttgatagggataatgcataatatatgcaatgtctgcggttcaaatcccgga 37920994  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 48315091 - 48315022
Alignment:
Q  156 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 224  Q
    |||||| |||||||||||||||||| | | ||||||| ||||||||| |||||| |  ||||||||||||    
T  48315091 gtcctcgtgagcttagctcagttggtaaggataatgcataatatatgcaaggtccggggttcaaatcccg 48315022  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 4471 - 4535
Alignment:
Q  163 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgga 226  Q
    |||||||| || |||||  ||||||||||| |||||||||||||||||  ||||| |||||||||    
T  4471 tgagcttaactaagttgataggaataatgcataatatatgtaaggtctagagttcgaatcccgga 4535  T

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