View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_17 (Length: 278)
Name: NF4546_low_17
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 29057225 - 29056952
Alignment:
| Q |
1 |
cacagatcctataaaagttaaacattactttcacatagaaaaattaaaatgaaacagcagcagaaaaatacagcaaatttctgcttcaatgactcttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057225 |
cacagatcctataaaagttaaacattactttcatatagaaaaattaaaatgaaacaacagcagaaaaatacagcaaatttctgcttcaatgactcttttc |
29057126 |
T |
|
| Q |
101 |
taaagtactagtactagaaaaagaatgtcagtgccacatcacgtgttggtcatcaaactatagtcacatggtga-nnnnnnnatccagtacgacctttta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29057125 |
taaagtactagtactagaaaaagaatgtcagtgccacatcacgtgttggtcatcaaactatagtcacatggtgattttttttatccagtacgacctttta |
29057026 |
T |
|
| Q |
200 |
aagctaattggctgtcacatagaaaatgcatcgtttgcatt-aaaaggctgcaaatattttatattgaatgtat |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29057025 |
aagctaattggctgtcacatagaaaatgcatcgtttgcattaaaaaggctgcaaatattttatattgaatgtat |
29056952 |
T |
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