View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_18 (Length: 275)
Name: NF4546_low_18
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 2494625 - 2494823
Alignment:
| Q |
19 |
gatattcaatgacatgagtggtggtggagagtggtggctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgt |
118 |
Q |
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| T |
2494625 |
gatattcaatgacatgagtggttgtg---agtggtggctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgt |
2494721 |
T |
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| Q |
119 |
tgggtcggttggtgttgctgttggtgatgtcatgaattcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttg |
218 |
Q |
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| T |
2494722 |
tgggtcggttggtgttgctgttggtgatgtcatgaattcaccacagccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttg |
2494821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 3683923 - 3684086
Alignment:
| Q |
57 |
tcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgatgtcatgaatt |
156 |
Q |
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| T |
3683923 |
tcttccggttcacggcggtggaaattccggtgacaaccacatgcggcacattttatggaggcagggtcatcggaggtggcggttggtgatggcatgaatt |
3684022 |
T |
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| Q |
157 |
caccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
220 |
Q |
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| T |
3684023 |
cacaacaaccgtctagggcatgaccacctagggttgccacgtggtttttgagacattctttgta |
3684086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 220
Target Start/End: Complemental strand, 24181229 - 24181064
Alignment:
| Q |
55 |
gctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgct-gttggtgatgtcatga |
153 |
Q |
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| T |
24181229 |
gctcttgtggctcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtca-ttgggattgagagatgatggtggcatga |
24181131 |
T |
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| Q |
154 |
attcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
220 |
Q |
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| T |
24181130 |
attcaccacatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgta |
24181064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 14021837 - 14021876
Alignment:
| Q |
72 |
cggtggaagttacggtggcagccacaagcagcacatttta |
111 |
Q |
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| T |
14021837 |
cggtggaagttacggtggcagttacaagcagcacatttta |
14021876 |
T |
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