View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_2 (Length: 694)
Name: NF4546_low_2
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_2 |
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| [»] scaffold0280 (3 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 167 - 684
Target Start/End: Original strand, 9411 - 9927
Alignment:
| Q |
167 |
attattattaactaaagtagtattaatgatgactattttacagctgtgatttgagttatgtcgtttaatttgttatttgttgtgagtgtttggaataggt |
266 |
Q |
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| T |
9411 |
attattattaattaaaggagtactactgatgactattttactaatgtgatttgagttatgtcgtttaatttgttatttgttgtgagtgtttggaataggt |
9510 |
T |
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| Q |
267 |
tcgattatgttgctttttcgcggagattttggttgtgtgctttatactggtgattttcgttgggaagctggttgtgagaaggcaaggattgcaaaaaata |
366 |
Q |
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| T |
9511 |
tcgattatgttgcttttccgcggagattttggttgtgtgctttatactggtgattttcgttgggaagctggttgtgagaaggcaaggattgccaaaaata |
9610 |
T |
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| Q |
367 |
tgcttggtgttgctcttgaggaacatgatggtgatgttgatgttgtttatcttgatgatacttatgctaatcctacttatgattttcctaatcgtagcgt |
466 |
Q |
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| T |
9611 |
tgcttggtgttgctcttaaggaacatgatggtgatgttgatgttgtttatcttgataatacttatgctaatcctacttatgattttcctactcgtagcgt |
9710 |
T |
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| Q |
467 |
tgcggctcagcaggtacattgtaattctatcattcttggccccaatttgaaaaatttactgaattatagttttatgatagatatgttgtgataattgtgt |
566 |
Q |
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| T |
9711 |
tgcggctcagcaggtacattgtaattctatcattcttggccccaatttg-aaaattcactgagttatggatttgggataggaatgctgtgataattgttt |
9809 |
T |
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| Q |
567 |
tagggttcagaaatttggattattgaatatcgaataaggattgtgcattttcgattcctcgtgaaattcatgcatgtttttagaaaatttatctgctact |
666 |
Q |
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| T |
9810 |
tagggtttagaaattggggttattgaatattgaataaggattgtccattttcgattcctcgtgaaattcatgcatgtttttagaaaatttatctgcaact |
9909 |
T |
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| Q |
667 |
ttcattactgttgttcat |
684 |
Q |
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| T |
9910 |
ttcattactgttgttcat |
9927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 9250 - 9299
Alignment:
| Q |
20 |
ttgtcaccgccatcgacgcctgtcactgtcccggtacgtaaccctaaccc |
69 |
Q |
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| T |
9250 |
ttgtcaccgctatcgacgcctgtcactgtcccggtacgtatccctaaccc |
9299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 9334 - 9362
Alignment:
| Q |
122 |
agtttgtgtcagtgtcgtgtctggtgtct |
150 |
Q |
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| T |
9334 |
agtttgtgtcagtgtcgtgtctggtgtct |
9362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 179 - 604
Target Start/End: Original strand, 21910236 - 21910658
Alignment:
| Q |
179 |
taaagtagtattaatgatgactattttacagctgtgatttgagttatgtcgtttaatttgttatttgttgtgagtgtttggaataggttcgattatgttg |
278 |
Q |
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| T |
21910236 |
taaagtagtactactgacgactattttactactttgatttcagttctgtcgtttgatttgttatttgttg--agtttttggaataggttcgattatgttg |
21910333 |
T |
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| Q |
279 |
ctttttcgcggagattttggttgtgtgctttatactggtgattttcgttgggaagctggttgtgagaaggcaaggattgcaaaaaatatgcttggtgttg |
378 |
Q |
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|||||||| |||||||||||||||| |||| |||| ||||||||||||||||||| | |||||||||||||||||||||| | | | ||||||||||||| |
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| T |
21910334 |
ctttttcgtggagattttggttgtgagcttcataccggtgattttcgttgggaaggtagttgtgagaaggcaaggattgctagagaaatgcttggtgttg |
21910433 |
T |
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| Q |
379 |
ctcttgaggaacatgatggtgatgttgatgttgtttatcttgatgatacttatgctaatcctacttatgattttcctaatcgtagcgttgcggctcagca |
478 |
Q |
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| T |
21910434 |
ctctaaaggaacatgatggtgttgttgatgttgtttgccttgataatacttatgctaatcctacttatgaatttcctagtcgtagcgttgcggctcaaca |
21910533 |
T |
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| Q |
479 |
ggtacattgtaattctatcattcttggccccaatttgaaaaatttactgaattatagttttatgatagatatgttgtgataattgtgttagggttcagaa |
578 |
Q |
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| T |
21910534 |
ggtacattgcaattctatcattgtt-gccctaatttgaaacattcattgagttatgaatttgggatagaaatgctgtgataattgtgttagggttcggaa |
21910632 |
T |
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| Q |
579 |
atttggattattgaatatcgaataag |
604 |
Q |
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| T |
21910633 |
aatgggattaatgaatatcgaataag |
21910658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 21909649 - 21909686
Alignment:
| Q |
19 |
attgtcaccgccatcgacgcctgtcactgtcccggtac |
56 |
Q |
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| T |
21909649 |
attgtcaccgccatcgatgcctgtcactgtcccggtac |
21909686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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