View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_23 (Length: 232)
Name: NF4546_low_23
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 42518351 - 42518152
Alignment:
| Q |
19 |
aatagtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtt |
118 |
Q |
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| T |
42518351 |
aatagtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagacaaatcctccctaaagttctttttattatcatatatagtt |
42518252 |
T |
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| Q |
119 |
tggtgaaaaatattttaaacttgaaataagtctctcaattttctatgatatatcgcaaattaactgtagatgagattaaatttaaaacctagagaataat |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42518251 |
tggtgaaaaatattttaaacttgaaataaggctctcaattttcaatgatagatcgcaaattaactgtagatgagattaaatttaaaacccagagaataat |
42518152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 42508919 - 42508735
Alignment:
| Q |
31 |
tctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtttggtgaaaaata |
130 |
Q |
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|||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| ||||| ||| ||||||||| |
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| T |
42508919 |
tctaaatggttcattttctgatacatcaagaaggatgtaatgaaaagccaaatcctcccaaaagttctttttactatcatgtatag-ttgatgaaaaata |
42508821 |
T |
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| Q |
131 |
ttttaaacttgaaataagtctctcaattttctatgatatat----cgcaaattaactgtagatgagattaaatttaaaacctagagaa |
214 |
Q |
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| T |
42508820 |
tttttaacttaaaacaag--tctcaattttatatgatagattgtatgtaaattaaaggtagatgagattaaatttaaaacctagagaa |
42508735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 42524869 - 42524839
Alignment:
| Q |
184 |
gtagatgagattaaatttaaaacctagagaa |
214 |
Q |
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| T |
42524869 |
gtagatgagattaaatttaaaacctagagaa |
42524839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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