View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_24 (Length: 231)
Name: NF4546_low_24
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 7030377 - 7030573
Alignment:
| Q |
16 |
aaaccagactcttattaagactaacataagagtgattttagttactaagagtgattttagttagtaataccagtatcaaacacacactgtgaaaattgtt |
115 |
Q |
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| T |
7030377 |
aaaccagtctcttatgtatactaacataagagtgattttagttagtaagagtgattttagttagtaatagcagtatcaaacacacactgtgaaaattgtt |
7030476 |
T |
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| Q |
116 |
aaaagtagtaaatagtaaaagtattaaacagagaaagtaattattacaatgttaacattagcaacaaaatcactattattggatacatgtacaatgt |
212 |
Q |
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| T |
7030477 |
aaaagtagtaaatagtaaaagtattaaacagagaaagtaattattacagtgttaacattagcaacaaaatcactattattgggtacatgtacaatgt |
7030573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 7044710 - 7044918
Alignment:
| Q |
16 |
aaaccagactcttattaagactaacataagagtgattttagttactaagagtgattttagttagtaataccagtatcaaacacacactgtgaaaattgtt |
115 |
Q |
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| T |
7044710 |
aaaccagtctcttatgtatactaacataagagtgattttagttagtaagagtgattttagttagtaatagcagtatcaaacacacactgtgaaaatggtt |
7044809 |
T |
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| Q |
116 |
aaaagtagtaaatagtaaaagtattaaacagagaaagtaattattacaatgttaacattagcaacaaaatcactattattggatacatgtacaatgtatg |
215 |
Q |
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| T |
7044810 |
aaaagtagtaaatagtaaaagtattaaacagagaaagtaattattacagtgttaacattagcaacaaaatcactattattgg------gtacaatgtatg |
7044903 |
T |
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| Q |
216 |
acatacttggaacca |
230 |
Q |
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| T |
7044904 |
acatacttcgaacca |
7044918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 7036565 - 7036624
Alignment:
| Q |
61 |
taagagtgattttagttagtaataccagtatcaaacacacactgtgaaaattgttaaaag |
120 |
Q |
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| T |
7036565 |
taagggtgattttagttagtactagcagtatcaaacacaccctgtgaaaattgttaaaag |
7036624 |
T |
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